Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   GFC29_RS12395 Genome accession   NZ_CP015436
Coordinates   2583412..2583756 (-) Length   114 a.a.
NCBI ID   WP_044742425.1    Uniprot ID   -
Organism   Anoxybacillus sp. B7M1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2578412..2588756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFC29_RS12385 (GFC29_2536) - 2579499..2582267 (+) 2769 WP_044742427.1 DEAD/DEAH box helicase -
  GFC29_RS20305 (GFC29_2537) - 2582264..2582386 (+) 123 WP_255363044.1 hypothetical protein -
  GFC29_RS12390 (GFC29_2538) - 2582546..2583040 (-) 495 WP_066150468.1 hypothetical protein -
  GFC29_RS12395 (GFC29_2539) ssbB 2583412..2583756 (-) 345 WP_044742425.1 single-stranded DNA-binding protein Machinery gene
  GFC29_RS12400 (GFC29_2540) - 2584040..2584501 (+) 462 WP_044742424.1 YwpF-like family protein -
  GFC29_RS12405 (GFC29_2541) - 2584508..2585128 (-) 621 WP_156487539.1 class D sortase -
  GFC29_RS12410 (GFC29_2542) - 2585130..2586092 (-) 963 WP_052660930.1 processed acidic surface protein -
  GFC29_RS12415 (GFC29_2543) - 2586472..2587845 (-) 1374 WP_044742423.1 aspartate kinase -
  GFC29_RS12420 (GFC29_2544) - 2587938..2588372 (-) 435 WP_044742422.1 DUF1284 domain-containing protein -

Sequence

Protein


Download         Length: 114 a.a.        Molecular weight: 12837.69 Da        Isoelectric Point: 9.5364

>NTDB_id=179731 GFC29_RS12395 WP_044742425.1 2583412..2583756(-) (ssbB) [Anoxybacillus sp. B7M1]
MINQVVLVGRLTKDPELRYTADGAAMANVTLAVSRSFRNTDGEIDTDFIHCKLWRKIAENTAHYCRKGSIIGVMGRIQTR
NYENQAGKRVYVTEIIAESVRFMGGKAAVWNTQE

Nucleotide


Download         Length: 345 bp        

>NTDB_id=179731 GFC29_RS12395 WP_044742425.1 2583412..2583756(-) (ssbB) [Anoxybacillus sp. B7M1]
ATGATTAACCAGGTCGTGTTAGTCGGCCGTTTGACGAAAGATCCAGAACTTCGCTATACGGCAGATGGGGCAGCGATGGC
GAATGTGACGCTGGCCGTAAGCCGCAGCTTCCGCAATACGGACGGTGAAATTGATACAGATTTTATTCATTGCAAGCTAT
GGCGAAAAATAGCGGAGAACACGGCTCATTATTGCCGCAAAGGCTCGATTATTGGCGTCATGGGCCGCATTCAAACACGA
AATTACGAAAATCAAGCGGGAAAACGTGTATATGTGACCGAGATTATTGCCGAGTCTGTTCGTTTTATGGGCGGCAAGGC
CGCCGTATGGAACACGCAAGAGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

67.29

93.86

0.632
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

92.982

0.596
  ssb Latilactobacillus sakei subsp. sakei 23K

56.311

90.351

0.509
  ssbB Lactococcus lactis subsp. cremoris KW2

41.667

94.737

0.395
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.056

93.86

0.395
  ssbA Streptococcus mutans UA159

40.187

93.86

0.377
  ssbB/cilA Streptococcus mitis NCTC 12261

39.252

93.86

0.368
  ssbB/cilA Streptococcus pneumoniae TIGR4

39.252

93.86

0.368

Multiple sequence alignment