Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   GFC28_RS05615 Genome accession   NZ_CP015435
Coordinates   1175260..1176504 (-) Length   414 a.a.
NCBI ID   WP_044746071.1    Uniprot ID   A0A160F990
Organism   Anoxybacillus sp. B2M1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1170260..1181504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFC28_RS05595 (GFC28_1157) - 1170351..1171145 (-) 795 WP_044746069.1 TIGR00282 family metallophosphoesterase -
  GFC28_RS05600 (GFC28_1158) rny 1171231..1172790 (-) 1560 WP_044746070.1 ribonuclease Y -
  GFC28_RS05605 (GFC28_1159) - 1173637..1174077 (-) 441 Protein_1128 recombinase RecA -
  GFC28_RS05610 (GFC28_1160) recA 1174421..1175041 (-) 621 Protein_1129 recombinase RecA -
  GFC28_RS05615 (GFC28_1161) cinA 1175260..1176504 (-) 1245 WP_044746071.1 competence/damage-inducible protein A Machinery gene
  GFC28_RS05620 (GFC28_1162) pgsA 1176529..1177107 (-) 579 WP_044746072.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GFC28_RS05625 (GFC28_1163) - 1177144..1178043 (-) 900 WP_044746200.1 helix-turn-helix domain-containing protein -
  GFC28_RS05630 (GFC28_1164) - 1178067..1178858 (-) 792 WP_044746073.1 DUF3388 domain-containing protein -
  GFC28_RS05635 (GFC28_1165) - 1179004..1179252 (-) 249 WP_044746074.1 DUF3243 domain-containing protein -
  GFC28_RS05640 (GFC28_1166) - 1179321..1180037 (-) 717 WP_044746075.1 SDR family oxidoreductase -
  GFC28_RS05645 (GFC28_1167) - 1180089..1181375 (-) 1287 WP_044746076.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45166.96 Da        Isoelectric Point: 6.2690

>NTDB_id=179663 GFC28_RS05615 WP_044746071.1 1175260..1176504(-) (cinA) [Anoxybacillus sp. B2M1]
MNAEIIAVGSELLLGQIANTNAQFLSQQLAELGINVYFHTVVGDNATRLEAAVKTAQKRANLIIFTGGLGPTKDDLTKET
IAHLLQRELVMDQEALRSIEEYFKRTKRTMTENNKKQALVLQGAEVLKNDYGMAPGMALTIASITYMLLPGPPKEMRPMF
IQYGRPFLMSKLERHERIESRVLRFFGIGESQLETEIADLIDQQSNPTIAPLAGDGEVTLRLTAKHESSLEAKKLLDETE
AAIARRVGQYVYGYDNDTLFSKLVERLKEQNKTVAAAESLTGGRFTAELTAISGASQIVKGGVVCYTNEIKEQVLSVPAS
VLATDGAVSEPCAKLLAEHVRSFCKADIGISFTGVAGPDPLEGKPVGTVYVGISISGQETEVHALLLSGDRETIRTRTIK
YGCFAILKKLTAFL

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=179663 GFC28_RS05615 WP_044746071.1 1175260..1176504(-) (cinA) [Anoxybacillus sp. B2M1]
TTGAACGCTGAAATTATTGCGGTCGGCTCAGAGCTGCTATTGGGGCAAATTGCGAATACAAACGCTCAGTTTTTATCGCA
GCAGCTTGCTGAATTAGGGATTAATGTTTATTTTCATACCGTTGTCGGCGACAATGCAACGAGGCTCGAAGCGGCGGTCA
AAACAGCCCAAAAAAGGGCCAATCTGATTATTTTTACAGGTGGGCTTGGACCGACAAAAGATGATCTGACGAAGGAAACG
ATCGCTCATCTCTTGCAGCGGGAGCTTGTGATGGATCAGGAAGCGCTTCGATCAATTGAGGAGTATTTCAAACGAACCAA
GCGAACGATGACGGAAAATAATAAAAAGCAGGCGCTTGTATTACAAGGAGCAGAAGTGTTGAAAAATGACTACGGAATGG
CTCCAGGCATGGCTCTGACGATTGCGTCGATTACCTACATGCTTTTGCCTGGCCCTCCAAAAGAAATGAGGCCTATGTTT
ATTCAATATGGCCGCCCCTTTCTTATGAGCAAGCTGGAGCGTCATGAGCGCATTGAATCAAGAGTATTGCGTTTTTTTGG
CATTGGCGAATCTCAGTTGGAAACAGAAATTGCCGATTTAATTGACCAGCAATCCAATCCGACGATTGCGCCACTTGCAG
GTGATGGAGAGGTCACATTACGTTTGACAGCCAAACATGAATCATCTTTGGAAGCAAAAAAACTGCTTGATGAGACGGAA
GCCGCCATTGCCCGCCGCGTCGGTCAATATGTGTATGGATATGACAACGATACGTTGTTTTCAAAGCTAGTCGAGCGGCT
AAAGGAGCAAAATAAAACAGTGGCGGCTGCTGAGAGCTTAACAGGCGGTCGGTTTACTGCCGAGCTGACGGCTATTTCTG
GAGCTTCTCAAATAGTAAAAGGAGGGGTTGTTTGCTATACAAACGAAATAAAGGAGCAAGTTCTTTCTGTCCCTGCTTCT
GTGCTGGCAACAGACGGAGCGGTGAGTGAACCATGCGCGAAGTTGCTAGCGGAGCATGTCCGTTCCTTTTGCAAAGCGGA
TATTGGCATTAGTTTTACAGGAGTGGCAGGGCCTGATCCTCTAGAAGGAAAGCCGGTCGGAACGGTGTACGTAGGAATAT
CGATCAGCGGACAAGAAACGGAAGTGCATGCATTATTGTTAAGCGGAGACCGTGAAACGATTCGCACGCGTACCATCAAA
TATGGTTGTTTCGCTATTTTAAAAAAACTGACAGCTTTCTTATGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(258-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A160F990

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

60.049

98.551

0.592
  cinA Streptococcus pneumoniae TIGR4

48.456

100

0.493
  cinA Streptococcus pneumoniae Rx1

47.981

100

0.488
  cinA Streptococcus pneumoniae R6

47.981

100

0.488
  cinA Streptococcus pneumoniae D39

47.743

100

0.486
  cinA Streptococcus mitis NCTC 12261

47.733

100

0.483
  cinA Streptococcus mitis SK321

50.131

92.512

0.464
  cinA Streptococcus mutans UA159

47.118

96.377

0.454
  cinA Streptococcus suis isolate S10

41.27

91.304

0.377

Multiple sequence alignment