Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AOU00_RS23000 Genome accession   NZ_CP015423
Coordinates   5069627..5070895 (+) Length   422 a.a.
NCBI ID   WP_069291741.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain J     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5064627..5075895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOU00_RS22975 (AOU00_22955) - 5065462..5065716 (+) 255 WP_013309950.1 DUF3243 domain-containing protein -
  AOU00_RS22980 (AOU00_22960) - 5065944..5066717 (+) 774 WP_013370747.1 DUF3388 domain-containing protein -
  AOU00_RS22985 (AOU00_22965) - 5066748..5067848 (+) 1101 WP_069291740.1 helix-turn-helix domain-containing protein -
  AOU00_RS26725 - 5067933..5068097 (+) 165 WP_023988236.1 hypothetical protein -
  AOU00_RS22990 (AOU00_22970) - 5068242..5068733 (+) 492 WP_013309953.1 YajQ family cyclic di-GMP-binding protein -
  AOU00_RS22995 (AOU00_22975) pgsA 5068944..5069531 (+) 588 WP_013309954.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AOU00_RS23000 (AOU00_22980) cinA 5069627..5070895 (+) 1269 WP_069291741.1 competence/damage-inducible protein A Machinery gene
  AOU00_RS23005 (AOU00_22985) recA 5071138..5072199 (+) 1062 WP_023988239.1 recombinase RecA Machinery gene
  AOU00_RS23010 (AOU00_22990) - 5072395..5073144 (+) 750 WP_061829419.1 regulatory protein RecX -
  AOU00_RS23015 (AOU00_22995) rny 5073519..5075063 (+) 1545 WP_013309958.1 ribonuclease Y -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46395.39 Da        Isoelectric Point: 4.7765

>NTDB_id=179406 AOU00_RS23000 WP_069291741.1 5069627..5070895(+) (cinA) [Paenibacillus polymyxa strain J]
MKAEIIAVGTELLLGQIVNTNAQYLSQELATIGIDVYFQTVVGDNINRLQEAIRIAQKRADIILFSGGLGPTQDDLTKEA
IAAVLGRKLHIDRLAMDKLDQFFRNRGVEMTENNRRQALSIEGATPLENETGLAVGDAIAQDGKFYVVLPGPPKELKPMF
ANQAKPWLLQQALSGEEMPIYSKMLKFAGIGESALETHLLDLIQSQTDPTIAPYAKEGEVTIRISTKAASESEALIKLTA
TEVEIQQRLSEYMYASEDVALEKVIVDLMAKRELTVSAAESCTGGMLMEQITSIPGSAAMFQGGIVCYSNEMKMKLLNVP
YDYLEGDHAPGAVSKEVALVLAEQARMIMDSDFGLSVTGVAGPGYSERKPVGLVYIGIAERDKETEVHELRLSGNRETIR
LRSVKAILYRLWRRLVENEKLS

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=179406 AOU00_RS23000 WP_069291741.1 5069627..5070895(+) (cinA) [Paenibacillus polymyxa strain J]
ATGAAAGCTGAAATAATTGCAGTAGGAACAGAGTTATTGCTCGGACAAATAGTGAATACAAATGCTCAATATTTGTCACA
AGAGCTGGCTACAATTGGAATCGATGTATATTTTCAGACTGTGGTTGGCGATAACATAAATCGGCTTCAGGAAGCGATAA
GAATTGCTCAGAAGCGTGCGGATATTATTTTGTTTTCCGGCGGTCTGGGGCCGACTCAGGATGATTTGACGAAAGAGGCG
ATAGCGGCTGTATTGGGGCGGAAATTGCACATAGATCGTCTTGCAATGGACAAGCTAGATCAATTTTTCCGTAACCGTGG
GGTAGAAATGACCGAGAATAACCGCCGGCAGGCGCTTTCTATTGAAGGTGCTACTCCGCTTGAAAATGAGACAGGGCTAG
CTGTGGGCGACGCGATTGCACAGGACGGTAAATTTTATGTAGTTTTGCCTGGACCGCCTAAGGAACTCAAACCCATGTTT
GCAAACCAGGCGAAACCTTGGTTGCTTCAGCAGGCATTGAGCGGTGAGGAAATGCCAATTTATTCGAAAATGCTAAAATT
TGCAGGGATCGGTGAGTCAGCTCTTGAAACCCATTTGTTAGATCTAATCCAATCCCAGACAGATCCCACGATTGCCCCTT
ATGCCAAGGAAGGGGAAGTCACGATCCGTATATCCACCAAGGCGGCCAGCGAAAGTGAAGCATTAATTAAGCTGACAGCT
ACGGAAGTAGAAATTCAGCAGCGTCTTTCGGAGTATATGTATGCAAGCGAGGATGTTGCGCTGGAGAAGGTTATCGTAGA
TCTAATGGCCAAACGCGAACTCACGGTGAGTGCGGCAGAAAGCTGTACAGGTGGAATGCTGATGGAACAGATTACTTCTA
TACCTGGCAGTGCTGCTATGTTTCAAGGTGGCATCGTGTGCTATTCCAATGAAATGAAGATGAAGTTACTCAACGTGCCT
TATGATTATTTGGAAGGGGACCATGCGCCAGGCGCAGTGAGTAAGGAAGTAGCCCTTGTGCTTGCAGAGCAGGCGAGAAT
GATCATGGATAGCGATTTTGGACTTTCAGTTACTGGTGTAGCTGGGCCTGGGTATTCCGAACGGAAGCCAGTCGGTCTAG
TGTATATTGGCATTGCTGAACGCGACAAGGAAACGGAAGTACATGAACTGAGACTGAGTGGCAACCGTGAAACAATCCGA
CTGCGATCAGTTAAAGCAATCCTGTACAGATTGTGGCGCAGGCTGGTAGAGAACGAGAAACTCTCTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(260-414)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(182-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

50

97.156

0.486
  cinA Streptococcus pneumoniae TIGR4

49.756

97.156

0.483
  cinA Streptococcus mitis NCTC 12261

49.512

97.156

0.481
  cinA Streptococcus pneumoniae Rx1

49.512

97.156

0.481
  cinA Streptococcus pneumoniae R6

49.512

97.156

0.481
  cinA Streptococcus pneumoniae D39

49.268

97.156

0.479
  cinA Bacillus subtilis subsp. subtilis str. 168

48.762

95.735

0.467
  cinA Streptococcus mutans UA159

45.412

100

0.457
  cinA Streptococcus suis isolate S10

44.909

90.758

0.408

Multiple sequence alignment