Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   S40542_RS03180 Genome accession   NZ_CP015413
Coordinates   766094..767329 (-) Length   411 a.a.
NCBI ID   WP_046356875.1    Uniprot ID   A0A0F6ABE9
Organism   Pseudoalteromonas luteoviolacea strain S40542     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 761094..772329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S40542_RS03155 (S40542_03155) - 761571..762455 (+) 885 WP_046356880.1 LysR family transcriptional regulator -
  S40542_RS03160 (S40542_03160) yacG 762448..762687 (-) 240 WP_046356879.1 DNA gyrase inhibitor YacG -
  S40542_RS03165 (S40542_03165) pilB 762764..764440 (-) 1677 WP_046356878.1 type IV-A pilus assembly ATPase PilB Machinery gene
  S40542_RS03170 (S40542_03170) coaE 764560..765165 (-) 606 WP_046356877.1 dephospho-CoA kinase -
  S40542_RS03175 (S40542_03175) pilD 765168..766058 (-) 891 WP_046356876.1 A24 family peptidase Machinery gene
  S40542_RS03180 (S40542_03180) pilC 766094..767329 (-) 1236 WP_046356875.1 type II secretion system F family protein Machinery gene
  S40542_RS03185 (S40542_03185) - 767388..767858 (-) 471 WP_046356874.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  S40542_RS03190 (S40542_03190) nadC 768113..768952 (-) 840 WP_046356873.1 carboxylating nicotinate-nucleotide diphosphorylase -
  S40542_RS03195 (S40542_03195) ampD 769120..769683 (+) 564 WP_046356872.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  S40542_RS03200 (S40542_03200) ampE 769688..770572 (+) 885 WP_046356871.1 beta-lactamase regulator AmpE -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 44637.53 Da        Isoelectric Point: 9.6627

>NTDB_id=179316 S40542_RS03180 WP_046356875.1 766094..767329(-) (pilC) [Pseudoalteromonas luteoviolacea strain S40542]
MALSSKESTTKIDTFVWVGVSARGKKLEGEMTGTSVALVKAQLRKQGITPSKVKRKPKPLFGFKSVQKITPKDISIVTRQ
IATMLTAGVSLVQSLDMIASGAKNKSVSKLIGSIADEVKAGQPLARSLRSHPRYFDDLYCDLIESGEQSGALDRIFDRVA
LYKEKAEALKSKIKKAMFYPIAVITVALIVTSILLIFVVPQFEDIFAGFGAELPAFTRLVISISEFMQEYWWIMLLIIGG
GGYVYKELLIRNDNVKHANDRLILRLPVVGEILKKAAVARYARTLSTTFAAGVPLVDALDSAAGASGNIIYKNAILDIKG
EVSSGNQMNWAMRNSKIFPDMVVQMVAIGEESGALDSMLAKVASIYEQEVDDAVDGLSTLLEPLIMAILGVLVGGLIVAM
YLPIFQLGNVI

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=179316 S40542_RS03180 WP_046356875.1 766094..767329(-) (pilC) [Pseudoalteromonas luteoviolacea strain S40542]
ATGGCACTCTCCTCTAAAGAAAGTACAACCAAAATAGATACATTTGTCTGGGTTGGCGTCAGCGCTCGAGGCAAAAAACT
CGAAGGCGAAATGACGGGCACCAGTGTTGCACTGGTCAAAGCGCAACTTCGAAAACAAGGCATTACTCCCTCAAAAGTAA
AACGTAAACCTAAACCATTATTCGGTTTTAAAAGCGTACAAAAAATAACTCCTAAAGATATTTCTATTGTTACCAGACAA
ATTGCGACTATGCTAACCGCTGGCGTATCTCTGGTGCAGTCTCTTGATATGATTGCCTCTGGTGCAAAAAATAAAAGCGT
GAGTAAACTCATTGGCTCCATCGCTGATGAAGTAAAAGCCGGTCAACCCTTAGCAAGAAGCCTACGCTCACATCCTCGCT
ACTTTGATGATTTATATTGCGATCTGATTGAGTCTGGCGAGCAATCAGGTGCACTAGATAGAATTTTTGATCGAGTCGCT
TTGTATAAAGAAAAAGCCGAAGCACTTAAATCTAAGATTAAAAAAGCAATGTTTTACCCCATTGCGGTGATCACTGTCGC
GCTCATTGTTACCTCAATCCTTCTTATTTTTGTAGTACCCCAATTTGAAGATATTTTTGCTGGTTTTGGTGCTGAACTCC
CTGCATTTACACGACTCGTGATATCAATATCAGAGTTTATGCAAGAGTATTGGTGGATAATGCTGCTGATTATCGGTGGT
GGTGGCTATGTCTATAAAGAATTATTGATCCGTAATGACAATGTTAAACACGCAAATGATCGCTTAATTTTAAGGTTGCC
AGTCGTTGGTGAGATTTTAAAAAAAGCGGCTGTAGCAAGGTATGCCCGTACACTATCCACTACTTTTGCTGCTGGCGTCC
CGTTAGTTGATGCACTCGATTCTGCAGCTGGCGCTTCTGGTAATATCATTTATAAAAATGCCATCTTAGATATCAAAGGG
GAAGTAAGCTCAGGTAACCAAATGAACTGGGCAATGCGTAACTCAAAAATCTTTCCTGATATGGTTGTTCAAATGGTAGC
AATTGGTGAAGAGTCTGGTGCACTAGACAGTATGTTAGCCAAAGTAGCCAGTATATACGAACAAGAAGTTGATGATGCTG
TTGATGGCCTATCTACGCTGCTTGAGCCACTCATTATGGCCATACTTGGCGTTTTAGTTGGTGGGTTAATCGTGGCGATG
TACTTACCCATATTTCAACTTGGTAACGTTATTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-403)

Type II secretion system (T2SS), protein F (T2SSF)

(78-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F6ABE9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

59.259

98.54

0.584
  pilC Legionella pneumophila strain ERS1305867

56.858

97.567

0.555
  pilC Acinetobacter baylyi ADP1

54.321

98.54

0.535
  pilC Acinetobacter baumannii D1279779

54.02

96.837

0.523
  pilC Vibrio campbellii strain DS40M4

42.998

99.027

0.426
  pilC Vibrio cholerae strain A1552

42.963

98.54

0.423
  pilG Neisseria meningitidis 44/76-A

42.965

96.837

0.416
  pilG Neisseria gonorrhoeae MS11

42.714

96.837

0.414

Multiple sequence alignment