Detailed information NTG0179315

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: S40542_RS03175
• Genome accession: NZ_CP015413
• Coordinates: 765168..766058 (-)
• Length: 296 a.a.
• NCBI ID: WP_046356876.1
• Uniprot ID: A0A0F6A975
• Organism: Pseudoalteromonas luteoviolacea strain S40542
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 760168..771058

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
S40542_RS03150 (S40542_03150)	-	760415..761467 (-)	1053	WP_046356881.1	alpha/beta hydrolase	-
S40542_RS03155 (S40542_03155)	-	761571..762455 (+)	885	WP_046356880.1	LysR family transcriptional regulator	-
S40542_RS03160 (S40542_03160)	yacG	762448..762687 (-)	240	WP_046356879.1	DNA gyrase inhibitor YacG	-
S40542_RS03165 (S40542_03165)	pilB	762764..764440 (-)	1677	WP_046356878.1	type IV-A pilus assembly ATPase PilB	Machinery gene
S40542_RS03170 (S40542_03170)	coaE	764560..765165 (-)	606	WP_046356877.1	dephospho-CoA kinase	-
S40542_RS03175 (S40542_03175)	pilD	765168..766058 (-)	891	WP_046356876.1	A24 family peptidase	Machinery gene
S40542_RS03180 (S40542_03180)	pilC	766094..767329 (-)	1236	WP_046356875.1	type II secretion system F family protein	Machinery gene
S40542_RS03185 (S40542_03185)	-	767388..767858 (-)	471	WP_046356874.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
S40542_RS03190 (S40542_03190)	nadC	768113..768952 (-)	840	WP_046356873.1	carboxylating nicotinate-nucleotide diphosphorylase	-
S40542_RS03195 (S40542_03195)	ampD	769120..769683 (+)	564	WP_046356872.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
S40542_RS03200 (S40542_03200)	ampE	769688..770572 (+)	885	WP_046356871.1	beta-lactamase regulator AmpE	-

Sequence

Protein

• Length: 296 a.a.
• Molecular weight: 32742.91 Da
• Isoelectric Point: 6.9048

>NTDB_id=179315 S40542_RS03175 WP_046356876.1 765168..766058(-) (pilD) [Pseudoalteromonas luteoviolacea strain S40542]
MQDVWHLMQQQPWFFLLSVGLTSACIGSFLNVVIYRLPKMMENEWKTECKIILGQHEQGSDQTAPCPSTFNLVTPRSTCP
SCNTQIKAHHNIPILSWLLLKGRCAYCSASISVKYPCIEMLTAAASLWVAWHFGATLTALLYIVMTWGLIALIFIDIDKM
LLPDQLTQPMLWLALLSAVLGLTITVESAIWGAVAGYLSLWSVYWLFKLLTGKEGMGYGDFKLLAIFGALLGWQALITII
LLSSVVGAVIGSIQLAVQGKDKATPIPFGPYLAIAGWLCLFYGDALEVWYFNLLGV

Nucleotide

• Length: 891 bp

>NTDB_id=179315 S40542_RS03175 WP_046356876.1 765168..766058(-) (pilD) [Pseudoalteromonas luteoviolacea strain S40542]
ATGCAAGATGTCTGGCATTTAATGCAGCAACAACCGTGGTTTTTTCTATTGTCAGTGGGCTTAACGAGCGCCTGTATCGG
CAGTTTTTTAAATGTTGTGATTTATCGTTTACCTAAAATGATGGAAAACGAGTGGAAAACTGAGTGTAAAATCATACTTG
GACAACACGAGCAAGGCTCAGATCAAACAGCACCTTGCCCAAGTACGTTTAACTTAGTCACACCTCGCTCGACTTGCCCG
AGCTGTAATACGCAAATAAAAGCACATCATAATATTCCCATTTTGAGTTGGCTCCTGCTCAAAGGCCGTTGCGCGTACTG
TAGTGCCTCTATTTCAGTAAAATACCCTTGTATAGAAATGCTTACCGCCGCTGCATCTTTATGGGTAGCGTGGCATTTTG
GCGCAACGTTGACAGCGCTTCTGTATATTGTGATGACTTGGGGTTTAATTGCGCTTATATTTATTGATATAGACAAAATG
TTACTCCCAGATCAACTCACACAACCTATGCTTTGGCTAGCACTGCTCAGCGCGGTACTTGGGCTTACCATAACCGTAGA
ATCCGCCATTTGGGGAGCTGTCGCAGGCTACCTGAGTTTGTGGAGTGTTTATTGGCTGTTTAAATTACTCACAGGCAAAG
AAGGCATGGGTTATGGTGATTTCAAGCTTTTGGCTATTTTTGGCGCGTTACTAGGCTGGCAAGCACTGATCACGATTATT
TTACTTTCTAGTGTAGTTGGCGCGGTAATTGGCAGCATTCAACTTGCAGTACAAGGAAAAGACAAGGCTACGCCTATTCC
CTTCGGCCCTTATTTGGCGATTGCTGGTTGGCTATGCTTGTTCTATGGTGATGCGTTAGAAGTATGGTATTTTAATTTAT
TAGGGGTATAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-133)

• Type IV leader peptidase family (Peptidase_A24) (143-251)

3D structure

• AlphaFold DB: A0A0F6A975

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.125	97.297	0.517
pilD	Vibrio campbellii strain DS40M4	51.877	98.986	0.514
pilD	Acinetobacter baumannii D1279779	47.241	97.973	0.463
pilD	Acinetobacter nosocomialis M2	46.897	97.973	0.459
pilD	Neisseria gonorrhoeae MS11	44.061	88.176	0.389