Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   FORC54_RS04660 Genome accession   NZ_CP019121
Coordinates   975372..975998 (+) Length   208 a.a.
NCBI ID   WP_038939456.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_054     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 970372..980998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC54_RS04650 (FORC54_0890) - 971629..973416 (-) 1788 WP_039561943.1 sensor histidine kinase -
  FORC54_RS04655 (FORC54_0891) tig 973968..975266 (+) 1299 WP_011078150.1 trigger factor -
  FORC54_RS04660 (FORC54_0892) clpP 975372..975998 (+) 627 WP_038939456.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  FORC54_RS04665 (FORC54_0893) clpX 976069..977349 (+) 1281 WP_038939457.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  FORC54_RS04670 (FORC54_0894) lon 977468..979819 (+) 2352 WP_017420949.1 endopeptidase La -
  FORC54_RS04675 (FORC54_0895) - 980013..980285 (+) 273 WP_013572181.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 22979.33 Da        Isoelectric Point: 5.0212

>NTDB_id=178768 FORC54_RS04660 WP_038939456.1 975372..975998(+) (clpP) [Vibrio vulnificus strain FORC_054]
MSYQEKNAMSPIIDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSP
GGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIK
TKLNKLLAEHTGQPLEVIERDTDRDNFMSADQAVEYGLVDAVLTHRNA

Nucleotide


Download         Length: 627 bp        

>NTDB_id=178768 FORC54_RS04660 WP_038939456.1 975372..975998(+) (clpP) [Vibrio vulnificus strain FORC_054]
ATGAGCTACCAAGAAAAAAATGCAATGTCGCCAATCATCGACGCACTAGTACCAATGGTGGTTGAACAAACTTCCCGTGG
TGAACGTTCTTACGATATTTATTCGCGTTTGCTAAAAGAGCGAGTGATTTTCCTCACCGGACAGGTTGAAGACCACATGG
CAAACCTTGTCGTGGCTCAGCTACTTTTCCTAGAGTCTGAGAACCCAGACAAAGATATCTTCCTTTACATTAACTCTCCA
GGTGGCAGCGTGACAGCAGGTATGTCGATTTACGACACAATGCAGTTCATCAAGCCAAATGTGAGCACAGTATGTATGGG
TCAAGCATGTTCAATGGGTGCATTTTTGCTTGCTGGTGGTGCACCAGGTAAGCGTTATGTACTACCTAACTCACGTGTGA
TGATTCATCAGCCACTTGGTGGTTTCCAAGGTCAAGCTTCCGATATCCAAATTCATGCTCAGGAAATTCTTACTATCAAG
ACTAAACTGAACAAGTTGTTGGCGGAGCACACCGGACAACCATTGGAAGTGATTGAACGTGATACTGATCGTGATAACTT
TATGTCGGCAGATCAGGCAGTAGAATACGGTTTGGTGGATGCAGTATTGACTCATCGCAACGCTTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(26-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

70.526

91.346

0.644
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.894

90.385

0.587
  clpP Streptococcus pneumoniae Rx1

53.608

93.269

0.5
  clpP Streptococcus pneumoniae D39

53.608

93.269

0.5
  clpP Streptococcus pneumoniae R6

53.608

93.269

0.5
  clpP Streptococcus pneumoniae TIGR4

53.608

93.269

0.5
  clpP Streptococcus thermophilus LMG 18311

52.604

92.308

0.486
  clpP Streptococcus thermophilus LMD-9

52.604

92.308

0.486
  clpP Lactococcus lactis subsp. cremoris KW2

52.632

91.346

0.481
  clpP Streptococcus mutans UA159

51.813

92.788

0.481
  clpP Streptococcus pyogenes JRS4

52.105

91.346

0.476
  clpP Streptococcus pyogenes MGAS315

52.105

91.346

0.476
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.053

91.346

0.466

Multiple sequence alignment