Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   BT246_RS08650 Genome accession   NZ_CP015350
Coordinates   1649813..1650415 (-) Length   200 a.a.
NCBI ID   WP_000155599.1    Uniprot ID   A0A9W5VMY9
Organism   Bacillus thuringiensis strain MYBT18246     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1644813..1655415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BT246_RS08630 (BT246_17790) dnaD 1645132..1645839 (+) 708 WP_000728542.1 DNA replication protein DnaD -
  BT246_RS08635 (BT246_17800) nth 1645855..1646502 (+) 648 WP_000933035.1 endonuclease III -
  BT246_RS08640 (BT246_17820) - 1646506..1647024 (+) 519 WP_023521512.1 YpoC family protein -
  BT246_RS08645 (BT246_17830) - 1647050..1649746 (-) 2697 WP_065482933.1 PBP1A family penicillin-binding protein -
  BT246_RS08650 (BT246_17840) recU 1649813..1650415 (-) 603 WP_000155599.1 Holliday junction resolvase RecU Machinery gene
  BT246_RS08655 (BT246_17850) - 1650519..1651544 (+) 1026 WP_023521514.1 DUF2515 domain-containing protein -
  BT246_RS39500 - 1651697..1651876 (-) 180 WP_001987054.1 hypothetical protein -
  BT246_RS08660 (BT246_17870) - 1651962..1652204 (+) 243 WP_001252036.1 hypothetical protein -
  BT246_RS08665 (BT246_17880) - 1652220..1652564 (+) 345 WP_000786937.1 YppE family protein -
  BT246_RS08670 (BT246_17890) - 1652591..1652782 (-) 192 WP_000242652.1 YppF family protein -
  BT246_RS08675 (BT246_17900) - 1652960..1653517 (+) 558 WP_023521515.1 YppG family protein -
  BT246_RS08680 (BT246_17910) - 1653673..1654101 (+) 429 WP_000546290.1 CotD family spore coat protein -
  BT246_RS08685 (BT246_17920) - 1654158..1654712 (+) 555 WP_065482937.1 DUF1273 domain-containing protein -
  BT246_RS08690 (BT246_17930) gpsB 1654810..1655145 (+) 336 WP_000622431.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23325.54 Da        Isoelectric Point: 9.4336

>NTDB_id=178768 BT246_RS08650 WP_000155599.1 1649813..1650415(-) (recU) [Bacillus thuringiensis strain MYBT18246]
MTIRYPNGKRYNQASQPQKTPIKTHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=178768 BT246_RS08650 WP_000155599.1 1649813..1650415(-) (recU) [Bacillus thuringiensis strain MYBT18246]
ATGACCATTCGTTACCCAAATGGAAAAAGGTATAATCAAGCTTCACAACCTCAAAAAACACCTATAAAAACACATACTTA
TAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATCAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAGCCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACGACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCAAAGGAAACAAAAAATAA
AACTAGTTTCCCACTTCAAAACTTCCACCTTCATCAAATAGAACATATGAAGCAAGTGGTTGCTCATAATGGAATTGCAT
TTGTCATTATTAAATTTACACTTTTTGATGAATTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACAGGTGGACGCAAGTCGATTACGAAAGAAGAAATAGAAGAGCATGGATCCTTATTATCATGCGGTTATCACCCTCG
GATTGACTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63.5

100

0.635

Multiple sequence alignment