Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BTI247_RS19635 Genome accession   NZ_CP015250
Coordinates   3895001..3896239 (-) Length   412 a.a.
NCBI ID   WP_029443109.1    Uniprot ID   A0A9X6LKQ5
Organism   Bacillus thuringiensis Bt18247     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3890001..3901239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTI247_RS19605 (BTI247_40380) spoVS 3890082..3890342 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  BTI247_RS19610 (BTI247_40390) - 3890492..3891286 (-) 795 WP_001221097.1 TIGR00282 family metallophosphoesterase -
  BTI247_RS19615 (BTI247_40400) rny 3891449..3893014 (-) 1566 WP_000099769.1 ribonuclease Y -
  BTI247_RS19625 (BTI247_40410) - 3893498..3893920 (-) 423 Protein_3896 recombinase RecA -
  BTI247_RS19630 (BTI247_40420) recA 3894248..3894856 (-) 609 Protein_3897 recombinase RecA -
  BTI247_RS19635 (BTI247_40430) cinA 3895001..3896239 (-) 1239 WP_029443109.1 competence/damage-inducible protein CinA Machinery gene
  BTI247_RS19640 (BTI247_40440) pgsA 3896260..3896838 (-) 579 WP_001052977.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BTI247_RS19645 (BTI247_40450) - 3896902..3897813 (-) 912 WP_000137474.1 helix-turn-helix domain-containing protein -
  BTI247_RS19650 (BTI247_40460) - 3897835..3898620 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  BTI247_RS19655 (BTI247_40470) - 3898759..3899007 (-) 249 WP_000114444.1 DUF3243 domain-containing protein -
  BTI247_RS19660 (BTI247_40480) - 3899083..3899796 (-) 714 WP_000759626.1 SDR family oxidoreductase -
  BTI247_RS19665 (BTI247_40490) - 3899897..3901183 (-) 1287 WP_000411277.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45437.81 Da        Isoelectric Point: 5.8792

>NTDB_id=178078 BTI247_RS19635 WP_029443109.1 3895001..3896239(-) (cinA) [Bacillus thuringiensis Bt18247]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIEAAEERADILIFTGGLGPTKDDLTKET
IATSLDEKLVYDEKALALISNYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGVNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVSEAEKLIQHVED
LILERVGEFFYGYDQEFLHYKAIELLKRKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYHNDVKQHVLRVPEEV
LHTDGAVSKECARYLAENVKDLLKADIGISFTGVAGPDASEQKEPGTVFVGLAIKGEQTAVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=178078 BTI247_RS19635 WP_029443109.1 3895001..3896239(-) (cinA) [Bacillus thuringiensis Bt18247]
ATGAATGCTGAGATTATTGCGGTTGGAACTGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTGGCTTCAATTGGAATTAACGTGTACTATCATACTGTTGTTGGTGATAATAATAAGCGACTGCAAAAGGCAATTG
AAGCTGCGGAAGAACGTGCTGATATCCTTATTTTTACAGGTGGGTTAGGGCCGACAAAAGATGATTTAACGAAAGAAACA
ATAGCGACTAGTTTAGATGAAAAGCTTGTGTATGATGAAAAGGCATTAGCCTTAATAAGTAATTACTTTAAGCGTACAGG
CCGTGAATTTACGGAGAATAATAAAAAGCAAGCGCTCGTTTTAAATGGAGCAACAGTATTTGCAAATGACCACGGTATGG
CGCCGGGTATGGGGGTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGGCCGCCAAAAGAAATGAAACCAATGTAT
GTAAGTTACGTAGAGCCTTTTTTACGTAATTTTACAACAGGAGAAAACATTTATTCACGTGTGCTTCGTTTCTTCGGTAT
TGGGGAGTCCCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACAAACCCAACAATTGCCCCGCTAGCAAATG
ATGGAGAAGTGACATTACGTTTAACTGCTAAGCATCAAAATGTTAGCGAAGCGGAGAAACTAATTCAACATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGAATTTTTGCATTATAAGGCAATCGAGTTATTGAA
GAGAAAAGGGTTAACTTTAGCATGTGCAGAAAGTTTAACAGGTGGTCTTTTTGGAAATCAAGTAACTGAAAATGCTGGTG
TTTCTTCTGTATTTAAGGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTTTTACGTGTGCCTGAAGAAGTA
TTGCATACTGATGGTGCAGTTAGTAAGGAATGTGCTCGTTATCTTGCTGAAAATGTTAAGGATTTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGGCCAGATGCGTCAGAACAGAAAGAGCCAGGAACAGTATTTGTTGGATTAGCGA
TTAAAGGTGAACAAACTGCAGTCTTTCCTCTTAATTTAAGTGGAAGTCGTCAACAAATTAGAGAACGATCAGCAAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(258-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.293

99.515

0.58
  cinA Streptococcus pneumoniae TIGR4

46.778

100

0.476
  cinA Streptococcus mitis SK321

46.539

100

0.473
  cinA Streptococcus pneumoniae Rx1

46.301

100

0.471
  cinA Streptococcus pneumoniae R6

46.301

100

0.471
  cinA Streptococcus pneumoniae D39

46.062

100

0.468
  cinA Streptococcus mitis NCTC 12261

45.823

100

0.466
  cinA Streptococcus mutans UA159

45.32

98.544

0.447
  cinA Streptococcus suis isolate S10

40.849

91.505

0.374

Multiple sequence alignment