Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptA   Type   Regulator
Locus tag   BUN12_RS10205 Genome accession   NZ_CP018902
Coordinates   1974978..1975682 (-) Length   234 a.a.
NCBI ID   WP_013353233.1    Uniprot ID   A0A9P1NIE3
Organism   Bacillus amyloliquefaciens strain HK1     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1969978..1980682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUN12_RS10190 (BUN12_2010) pepV 1970992..1972386 (-) 1395 WP_013353230.1 dipeptidase PepV -
  BUN12_RS10195 (BUN12_2011) - 1972482..1973786 (+) 1305 WP_013353231.1 NCS2 family permease -
  BUN12_RS10200 (BUN12_2012) - 1973821..1974981 (-) 1161 WP_013353232.1 ABC transporter permease -
  BUN12_RS10205 (BUN12_2013) pptA 1974978..1975682 (-) 705 WP_013353233.1 ABC transporter ATP-binding protein Regulator
  BUN12_RS10210 (BUN12_2014) - 1975963..1976184 (+) 222 WP_003152337.1 DeoR family transcriptional regulator -
  BUN12_RS10215 (BUN12_2015) - 1976313..1977032 (-) 720 WP_014470837.1 pseudouridine synthase -
  BUN12_RS10220 (BUN12_2016) - 1977089..1978726 (-) 1638 WP_013353235.1 putative polysaccharide biosynthesis protein -
  BUN12_RS10225 (BUN12_2017) - 1978934..1980199 (+) 1266 WP_013353236.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence


Protein


Download         Length: 234 a.a.        Molecular weight: 25859.65 Da        Isoelectric Point: 4.7536

>NTDB_id=176700 BUN12_RS10205 WP_013353233.1 1974978..1975682(-) (pptA) [Bacillus amyloliquefaciens strain HK1]
MGDLLNANIVSAGYADRPKVISNVSFTVNSREIAGLIGANGAGKSTVIKAILGLSRDMEGCIEWNDSSYAYIPERPSFYD
ELTLWEHLELTGSLRGIESGAWRERAGRLLDEFSLTAVKHELPSGFSKGMQQKLMLMQAFLAKPDIYIIDEPFIGLDPIS
TKLFTDMLIAEKERGAGILMCTHVLDTAEKICDRFYLLDQGALLLQGALEELQERTGGRSLLDCFYSAVRGSQR

Nucleotide


Download         Length: 705 bp        

>NTDB_id=176700 BUN12_RS10205 WP_013353233.1 1974978..1975682(-) (pptA) [Bacillus amyloliquefaciens strain HK1]
TTGGGAGACTTATTGAATGCAAACATTGTATCCGCCGGCTATGCTGACAGGCCGAAGGTGATTTCAAATGTATCTTTTAC
GGTCAATTCGAGAGAAATTGCCGGGTTAATCGGGGCGAACGGCGCGGGAAAAAGTACAGTGATAAAGGCGATTCTCGGGC
TGTCCCGGGATATGGAAGGGTGTATTGAGTGGAATGATTCATCTTATGCTTACATACCGGAGCGGCCGAGTTTTTATGAT
GAACTGACGCTCTGGGAGCATCTCGAGCTGACCGGATCATTACGGGGCATAGAAAGCGGAGCATGGCGTGAGCGGGCCGG
GCGGCTGCTTGATGAATTTTCATTGACGGCGGTAAAACATGAATTGCCTTCCGGTTTTTCAAAAGGGATGCAGCAAAAGC
TGATGCTCATGCAGGCGTTTTTGGCGAAACCGGATATTTACATCATTGATGAACCGTTTATCGGACTTGATCCGATCTCA
ACGAAGCTGTTTACCGACATGCTGATTGCTGAGAAAGAAAGGGGCGCGGGTATTCTGATGTGCACCCACGTTCTGGATAC
TGCCGAAAAAATCTGCGACCGTTTTTATTTGCTGGATCAAGGCGCTCTGCTTCTTCAAGGCGCGTTAGAAGAGCTTCAGG
AAAGAACAGGGGGCCGTTCATTGTTAGATTGCTTTTATTCAGCGGTTCGGGGCAGTCAGCGATGA

Domains


Predicted by InterProScan.

(22-153)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A9P1NIE3

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

43.568

100

0.449

  pptA Streptococcus thermophilus LMD-9

42.739

100

0.44


Multiple sequence alignment