Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   BS065_RS03835 Genome accession   NZ_CP018256
Coordinates   781076..781741 (+) Length   221 a.a.
NCBI ID   WP_000203219.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AF-673     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 776076..786741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS065_RS03810 (BS065_03795) - 776440..776925 (+) 486 WP_001981983.1 DUF1289 domain-containing protein -
  BS065_RS03815 (BS065_03800) gltA 776996..778270 (-) 1275 WP_001287579.1 citrate synthase -
  BS065_RS03830 (BS065_03815) - 780215..780637 (-) 423 WP_001195082.1 OsmC family protein -
  BS065_RS20440 - 780716..780835 (-) 120 Protein_722 hypothetical protein -
  BS065_RS03835 (BS065_03820) crp 781076..781741 (+) 666 WP_000203219.1 cAMP-activated global transcriptional regulator CRP Regulator
  BS065_RS19925 - 781798..782888 (+) 1091 WP_085940413.1 IS4-like element ISAba1 family transposase -
  BS065_RS03855 (BS065_03835) sdhC 783174..783575 (+) 402 WP_001984863.1 succinate dehydrogenase, cytochrome b556 subunit -
  BS065_RS03860 (BS065_03840) sdhD 783575..783940 (+) 366 WP_000833672.1 succinate dehydrogenase, hydrophobic membrane anchor protein -
  BS065_RS03865 (BS065_03845) sdhA 783953..785788 (+) 1836 WP_000500957.1 succinate dehydrogenase flavoprotein subunit -
  BS065_RS03870 (BS065_03850) - 785803..786513 (+) 711 WP_000086385.1 succinate dehydrogenase iron-sulfur subunit -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24956.78 Da        Isoelectric Point: 8.1128

>NTDB_id=174854 BS065_RS03835 WP_000203219.1 781076..781741(+) (crp) [Acinetobacter baumannii strain AF-673]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFLCTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=174854 BS065_RS03835 WP_000203219.1 781076..781741(+) (crp) [Acinetobacter baumannii strain AF-673]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCTCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
ACGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTACGTGAAGACGATGAACGTGAAATTGTTGTGGCATATTTGAATCCTGGTGACTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCTGAAGTTCGTACCCGTGATGTCTGTGAAATTGCGGA
AATTTCATATGACAACTTCCACGAACTGAGCAAACAGTATCCAGATCTCAGCTATGCCGTTTTCGCGCAACTCGTTCGTC
GTTTAAAAAATACAACTCGTAAAATGACCGATCTTGCATTTATTGATGTGTCAGGCCGTATTGCGCGTTGCTTAATCGAC
CTATCTTCACAACCAGAAGCAATGATCTTGCCGAATGGCCGTCAAATTCGTATTACTCGACAAGAGATTGGACGCATTGT
CGGGTGTTCACGAGAAATGGTTGGCCGTGTATTAAAGACCTTAGAAGATCAAGGTATGATTCAAACTGACGGTAAAGCTA
TTCTAATTTTTCTCTGTACACGATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, crp family (Crp)

(176-207)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

100

98.19

0.982
  crp Vibrio cholerae strain A1552

47.317

92.76

0.439
  crp Haemophilus influenzae Rd KW20

48.705

87.33

0.425

Multiple sequence alignment