Detailed information NTG0174856

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AXW93_RS24850
• Genome accession: NZ_CP014866
• Coordinates: 5229461..5230333 (+)
• Length: 290 a.a.
• NCBI ID: WP_080911813.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain PA_154197
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5224461..5235333

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AXW93_RS24835 (AXW93_24055)	-	5225844..5226308 (-)	465	WP_043103599.1	pilin	-
AXW93_RS24840 (AXW93_24060)	pilB	5226539..5228239 (+)	1701	WP_058161256.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AXW93_RS24845 (AXW93_24065)	pilC	5228243..5229460 (+)	1218	WP_003107299.1	type II secretion system F family protein	Machinery gene
AXW93_RS24850 (AXW93_24070)	pilD	5229461..5230333 (+)	873	WP_080911813.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
AXW93_RS24855 (AXW93_24075)	coaE	5230330..5230941 (+)	612	WP_003112838.1	dephospho-CoA kinase	-
AXW93_RS24860 (AXW93_24080)	yacG	5230938..5231138 (+)	201	WP_019486072.1	DNA gyrase inhibitor YacG	-
AXW93_RS24865 (AXW93_24085)	-	5231175..5231384 (-)	210	WP_003094660.1	hypothetical protein	-
AXW93_RS24870 (AXW93_24090)	-	5231490..5232179 (-)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
AXW93_RS24875 (AXW93_24095)	-	5232176..5232646 (-)	471	WP_019486073.1	hypothetical protein	-
AXW93_RS24880 (AXW93_24100)	-	5232643..5233068 (-)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
AXW93_RS24885 (AXW93_24105)	-	5233201..5233830 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
AXW93_RS24890 (AXW93_24110)	-	5233827..5234276 (+)	450	WP_003161439.1	MOSC domain-containing protein	-
AXW93_RS24895 (AXW93_24115)	-	5234302..5234472 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31877.90 Da
• Isoelectric Point: 7.7068

>NTDB_id=174856 AXW93_RS24850 WP_080911813.1 5229461..5230333(+) (pilD) [Pseudomonas aeruginosa strain PA_154197]
MTLLDYLASHPLAFVLCAILFGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=174856 AXW93_RS24850 WP_080911813.1 5229461..5230333(+) (pilD) [Pseudomonas aeruginosa strain PA_154197]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCTTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTACCGTTGCTCTGGCTGGGTCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTTGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	56.071	96.552	0.541
pilD	Vibrio campbellii strain DS40M4	53.357	97.586	0.521
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	49.281	95.862	0.472