Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   A3L20_RS20015 Genome accession   NZ_CP014847
Coordinates   3997873..3999111 (-) Length   412 a.a.
NCBI ID   WP_000990684.1    Uniprot ID   A0A9W3JPZ6
Organism   Bacillus thuringiensis strain HD12     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3992873..4004111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3L20_RS19990 (A3L20_19990) spoVS 3993286..3993546 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  A3L20_RS19995 (A3L20_19995) - 3993696..3994490 (-) 795 WP_001221092.1 TIGR00282 family metallophosphoesterase -
  A3L20_RS20000 (A3L20_20000) rny 3994649..3996214 (-) 1566 WP_000099770.1 ribonuclease Y -
  A3L20_RS20010 (A3L20_20010) recA 3996698..3997729 (-) 1032 WP_001283853.1 recombinase RecA Machinery gene
  A3L20_RS20015 (A3L20_20015) cinA 3997873..3999111 (-) 1239 WP_000990684.1 competence/damage-inducible protein A Machinery gene
  A3L20_RS20020 (A3L20_20020) pgsA 3999132..3999710 (-) 579 WP_001052967.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  A3L20_RS20025 (A3L20_20025) - 3999776..4000690 (-) 915 WP_000137466.1 helix-turn-helix domain-containing protein -
  A3L20_RS20030 (A3L20_20030) - 4000712..4001497 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  A3L20_RS20035 (A3L20_20035) - 4001636..4001884 (-) 249 WP_000114444.1 DUF3243 domain-containing protein -
  A3L20_RS20040 (A3L20_20040) ymfI 4001960..4002673 (-) 714 WP_000759625.1 elongation factor P 5-aminopentanone reductase -
  A3L20_RS20045 (A3L20_20045) yfmH 4002774..4004060 (-) 1287 WP_000411972.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45380.71 Da        Isoelectric Point: 5.6809

>NTDB_id=174721 A3L20_RS20015 WP_000990684.1 3997873..3999111(-) (cinA) [Bacillus thuringiensis strain HD12]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIEAAEERADILIFTGGLGPTKDDLTKET
IAASLDEALVYDEKALALISNYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGVNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVSEAEKLIQHVED
LILERVGEFFYGYDQEFLHYKAIELLKRKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYHNDVKQHVLRVPEEV
LHTDGAVSKECARYLAENVKDLLKADIGISFTGVAGPDASEQKEPGTVFVGLAIKGEQTAVFPLNLSGSRQQIRERSTKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=174721 A3L20_RS20015 WP_000990684.1 3997873..3999111(-) (cinA) [Bacillus thuringiensis strain HD12]
ATGAATGCTGAGATTATTGCGGTTGGAACTGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATTGGAATTAACGTGTACTATCATACTGTTGTTGGTGATAATAATAAGCGACTGCAAAAGGCGATTG
AAGCTGCGGAAGAACGTGCTGATATACTTATTTTTACAGGTGGATTAGGACCGACAAAAGATGATTTAACGAAAGAAACG
ATAGCGGCTAGTTTAGATGAAGCGCTTGTGTATGATGAAAAGGCATTAGCCTTAATAAGTAATTACTTTAAGCGTACAGG
CCGTGAATTTACGGAGAATAATAAAAAGCAAGCGCTAGTCTTAAATGGAGCAACAGTATTTGCAAATGACCACGGTATGG
CGCCTGGTATGGGGGTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGGCCGCCAAAAGAAATGAAACCAATGTAT
GTAAGTTACGTGGAGCCTTTTTTACGTAATTTTACAACAGGAGAAAACATTTATTCCCGTGTGCTTCGTTTCTTCGGTAT
CGGGGAGTCCCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACAAACCCAACAATCGCCCCGCTAGCAAATG
ATGGAGAAGTGACATTACGTTTAACCGCTAAGCATCAAAATGTTAGCGAAGCGGAGAAACTAATTCAACATGTGGAAGAT
TTGATTTTAGAAAGGGTAGGAGAATTTTTCTACGGATATGACCAAGAATTTTTGCATTATAAGGCAATCGAGTTATTGAA
GAGAAAAGGGTTAACTTTAGCATGTGCAGAAAGTTTAACAGGTGGTCTTTTTGGAAATCAAGTAACTGAAAATGCTGGTG
TTTCTTCTGTATTTAAAGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTATTGCGTGTGCCTGAAGAAGTG
TTGCATACTGATGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAAGGATTTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGGCCAGATGCTTCAGAACAGAAAGAGCCAGGAACAGTATTTGTTGGATTGGCGA
TTAAAGGTGAACAAACTGCAGTTTTTCCTCTTAATTTAAGTGGAAGTCGTCAACAAATTAGAGAACGCTCGACAAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Competence-damaged protein (CinA)

(258-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.049

99.515

0.578
  cinA Streptococcus pneumoniae TIGR4

47.017

100

0.478
  cinA Streptococcus pneumoniae Rx1

46.539

100

0.473
  cinA Streptococcus pneumoniae R6

46.539

100

0.473
  cinA Streptococcus mitis SK321

46.539

100

0.473
  cinA Streptococcus pneumoniae D39

46.301

100

0.471
  cinA Streptococcus mitis NCTC 12261

45.823

100

0.466
  cinA Streptococcus mutans UA159

45.32

98.544

0.447
  cinA Streptococcus suis isolate S10

40.584

91.505

0.371

Multiple sequence alignment