Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ASQ50_RS04700 Genome accession   NZ_CP014754
Coordinates   1005468..1006688 (+) Length   406 a.a.
NCBI ID   WP_058089901.1    Uniprot ID   A0A142FNH3
Organism   Marinobacter sp. LQ44     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1000468..1011688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASQ50_RS04685 (ASQ50_04680) - 1001103..1002848 (-) 1746 WP_058089904.1 PglL family O-oligosaccharyltransferase -
  ASQ50_RS04690 (ASQ50_04685) - 1002913..1003362 (-) 450 WP_058089903.1 pilin -
  ASQ50_RS04695 (ASQ50_04690) pilB 1003753..1005465 (+) 1713 WP_058089902.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ASQ50_RS04700 (ASQ50_04695) pilC 1005468..1006688 (+) 1221 WP_058089901.1 type II secretion system F family protein Machinery gene
  ASQ50_RS04705 (ASQ50_04700) pilD 1006762..1007637 (+) 876 WP_058089900.1 prepilin peptidase Machinery gene
  ASQ50_RS04710 (ASQ50_04705) coaE 1007735..1008340 (+) 606 WP_058089899.1 dephospho-CoA kinase -
  ASQ50_RS04715 (ASQ50_04710) - 1008423..1009421 (+) 999 WP_227510106.1 hypothetical protein -
  ASQ50_RS04720 (ASQ50_04715) tsaA 1009423..1010172 (+) 750 WP_058089897.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44603.64 Da        Isoelectric Point: 9.7047

>NTDB_id=173622 ASQ50_RS04700 WP_058089901.1 1005468..1006688(+) (pilC) [Marinobacter sp. LQ44]
MAEKAQKLESYVWEGKDRKGNKTKGELTGSNLALVKAQLRKQGIIPEKVKKKPKPLFGGSKKITPFDIAMLTRQLATMMK
AGVPLVQSFDIVADGLENKGLQELVMSIRNDISSGTGFASALRKHPKHFDDLYCNLVDSGEKAGALEQMLDRIATYLEKT
ELLKKKVKKAMTYPIAVIVVAIVVTAILLVKVVPQFESLFQGFGADLPVFTQMVVNMSEWLQKWWFVVLIGIVGTIFLFK
ESKRRSQKFSDIVDKYVLKLPVVGEILDKSAVAKFGRVLSTTFAAGVPLVDALDSVAGATGNAVYRDAIMRIKNDVSSGT
QLQATMRQQDIFPVMAVQLTAIGEESGNLDEMLRKVAEHYEAVVDDMVDNLTALMEPMIMAVLGVLVGGLIIAMYLPIFQ
MGQVVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=173622 ASQ50_RS04700 WP_058089901.1 1005468..1006688(+) (pilC) [Marinobacter sp. LQ44]
ATGGCAGAAAAAGCGCAGAAGCTGGAATCGTACGTTTGGGAAGGCAAAGACCGGAAGGGCAACAAGACCAAGGGCGAGCT
AACTGGCTCTAACCTGGCCTTGGTGAAAGCTCAACTGCGAAAGCAGGGGATTATCCCGGAGAAGGTCAAGAAGAAGCCCA
AGCCGTTATTTGGTGGCAGCAAGAAGATCACACCGTTTGATATTGCGATGCTTACCCGCCAGCTGGCCACGATGATGAAG
GCCGGCGTTCCCTTGGTGCAGAGTTTCGACATTGTGGCTGACGGCCTTGAGAACAAAGGCTTGCAGGAACTGGTAATGAG
TATCCGGAACGATATTTCCTCCGGCACCGGGTTTGCTTCTGCCCTGCGCAAGCACCCAAAACATTTTGACGACCTGTACT
GCAACCTGGTGGATTCGGGTGAAAAGGCCGGTGCGCTTGAGCAGATGCTGGACAGGATAGCCACCTATCTCGAGAAGACG
GAGTTGCTCAAGAAAAAAGTCAAAAAGGCCATGACTTATCCGATTGCGGTTATTGTGGTTGCTATTGTGGTAACTGCCAT
ATTGCTGGTTAAGGTGGTTCCCCAGTTCGAGAGTTTGTTCCAGGGCTTCGGGGCCGACCTGCCGGTGTTTACGCAGATGG
TGGTTAATATGTCGGAGTGGCTGCAGAAATGGTGGTTTGTTGTGCTTATTGGAATCGTGGGCACGATTTTCTTATTCAAG
GAATCCAAACGCAGGTCTCAGAAGTTCTCGGATATTGTCGACAAATATGTCCTCAAGCTGCCAGTTGTTGGCGAAATCCT
GGACAAATCCGCTGTCGCCAAGTTCGGCCGAGTGCTCTCTACCACCTTCGCCGCCGGTGTTCCATTGGTGGACGCACTGG
ACTCCGTTGCCGGAGCGACCGGTAACGCGGTATACCGGGATGCCATCATGAGAATCAAAAACGATGTCTCAAGCGGCACG
CAACTGCAAGCCACGATGCGCCAGCAAGATATCTTCCCGGTAATGGCTGTGCAATTAACTGCCATCGGCGAAGAATCCGG
TAACCTTGACGAAATGCTGAGAAAGGTCGCTGAGCACTATGAAGCCGTAGTAGACGATATGGTAGACAACCTCACCGCCC
TGATGGAGCCCATGATTATGGCGGTTCTGGGTGTACTGGTAGGCGGCTTGATCATCGCCATGTACCTGCCAATCTTCCAA
ATGGGCCAGGTTGTTGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-397)

Type II secretion system (T2SS), protein F (T2SSF)

(72-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A142FNH3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

66.42

99.754

0.663
  pilC Acinetobacter baumannii D1279779

60.247

99.754

0.601
  pilC Acinetobacter baylyi ADP1

58.374

100

0.584
  pilC Legionella pneumophila strain ERS1305867

52.709

100

0.527
  pilG Neisseria gonorrhoeae MS11

43.103

100

0.431
  pilG Neisseria meningitidis 44/76-A

42.857

100

0.429
  pilC Vibrio campbellii strain DS40M4

40.295

100

0.404
  pilC Vibrio cholerae strain A1552

40.148

100

0.401

Multiple sequence alignment