Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | VVCECT4999_RS03150 | Genome accession | NZ_CP014636 |
| Coordinates | 621263..622132 (-) | Length | 289 a.a. |
| NCBI ID | WP_038941424.1 | Uniprot ID | B7U4R2 |
| Organism | Vibrio vulnificus strain CECT 4999 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 616263..627132
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VVCECT4999_RS03115 (VVCECT4999_03080) | rpsP | 617415..617663 (+) | 249 | WP_011079541.1 | 30S ribosomal protein S16 | - |
| VVCECT4999_RS03120 (VVCECT4999_03085) | rimM | 617679..618227 (+) | 549 | WP_038941427.1 | ribosome maturation factor RimM | - |
| VVCECT4999_RS03125 (VVCECT4999_03090) | trmD | 618255..619004 (+) | 750 | WP_011079543.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| VVCECT4999_RS03130 (VVCECT4999_03095) | rplS | 619046..619399 (+) | 354 | WP_011079544.1 | 50S ribosomal protein L19 | - |
| VVCECT4999_RS03135 (VVCECT4999_03100) | yacG | 619623..619817 (-) | 195 | WP_038941426.1 | DNA gyrase inhibitor YacG | - |
| VVCECT4999_RS03140 (VVCECT4999_03105) | zapD | 619880..620620 (-) | 741 | WP_017421189.1 | cell division protein ZapD | - |
| VVCECT4999_RS03145 (VVCECT4999_03110) | coaE | 620653..621261 (-) | 609 | WP_039448926.1 | dephospho-CoA kinase | - |
| VVCECT4999_RS03150 (VVCECT4999_03115) | pilD | 621263..622132 (-) | 870 | WP_038941424.1 | prepilin peptidase | Machinery gene |
| VVCECT4999_RS03155 (VVCECT4999_03120) | pilC | 622225..623451 (-) | 1227 | WP_039448924.1 | type II secretion system F family protein | Machinery gene |
| VVCECT4999_RS03160 (VVCECT4999_03125) | pilB | 623499..625187 (-) | 1689 | WP_039448922.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| VVCECT4999_RS03165 (VVCECT4999_03130) | - | 625187..625630 (-) | 444 | WP_039448920.1 | pilin | - |
| VVCECT4999_RS03170 (VVCECT4999_03135) | nadC | 625853..626740 (-) | 888 | WP_039448918.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 32245.33 Da Isoelectric Point: 6.8198
>NTDB_id=172854 VVCECT4999_RS03150 WP_038941424.1 621263..622132(-) (pilD) [Vibrio vulnificus strain CECT 4999]
MDALQYYPWLYIGLASLFGLLVGSFLNVVIYRLPKIMELEWRQECAESFPEYKISPPTETLTLSTPRSSCPSCHTPIRVR
DNIPVFSWLALRGKCHHCQTKISARYPFVEALSAFLCGLIAWKFGYAPITVALIGFTLVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALLEISPVSLQDSVIGAMAGYLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGWQYLPMIILLSSVVGL
IFGLIQLRLQKQGIEMAFPFGPYLAIAGWVALMWGDSLMSWYLNYLIGA
MDALQYYPWLYIGLASLFGLLVGSFLNVVIYRLPKIMELEWRQECAESFPEYKISPPTETLTLSTPRSSCPSCHTPIRVR
DNIPVFSWLALRGKCHHCQTKISARYPFVEALSAFLCGLIAWKFGYAPITVALIGFTLVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALLEISPVSLQDSVIGAMAGYLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGWQYLPMIILLSSVVGL
IFGLIQLRLQKQGIEMAFPFGPYLAIAGWVALMWGDSLMSWYLNYLIGA
Nucleotide
Download Length: 870 bp
>NTDB_id=172854 VVCECT4999_RS03150 WP_038941424.1 621263..622132(-) (pilD) [Vibrio vulnificus strain CECT 4999]
ATGGACGCGTTACAGTACTACCCTTGGCTTTATATTGGTTTAGCTTCCCTGTTTGGCTTACTGGTAGGCAGCTTTCTTAA
CGTCGTCATCTACCGCCTACCAAAAATAATGGAACTGGAGTGGCGCCAAGAGTGTGCAGAGTCCTTTCCTGAATACAAAA
TATCACCGCCGACAGAAACCCTAACATTAAGCACGCCGCGTTCAAGTTGTCCTTCGTGTCATACCCCAATACGAGTTCGA
GATAATATTCCTGTCTTTAGTTGGCTAGCTCTAAGAGGAAAATGTCACCATTGCCAGACGAAAATCAGTGCTCGCTATCC
TTTTGTTGAAGCACTGAGCGCCTTTTTGTGCGGCCTAATCGCTTGGAAGTTCGGCTATGCACCAATTACCGTAGCACTGA
TTGGGTTTACTTTAGTCTTGATCGCCGCCACCTTCATCGACTTAGATACCATGCTACTGCCTGATCAGCTGACACTGCCG
CTGACGTGGGCTGGCATTGCGCTAGCGTTACTTGAGATAAGCCCAGTATCTCTGCAAGATTCAGTGATCGGTGCGATGGC
GGGTTATCTCTGCCTTTGGAGCGTTTATCACCTTTTCCGCTTGCTGACAGGAAAAGAAGGCATGGGTTACGGAGACTTTA
AATTGCTTGCGGCACTTGGAGCTTGGCTCGGCTGGCAATATCTACCGATGATCATCTTACTCTCTTCGGTTGTCGGGTTG
ATCTTTGGTCTCATTCAACTCAGATTGCAAAAACAAGGCATTGAGATGGCTTTCCCATTTGGGCCTTATCTAGCCATTGC
TGGTTGGGTCGCCTTGATGTGGGGAGATAGCTTGATGTCTTGGTATCTCAATTATCTTATAGGGGCATGA
ATGGACGCGTTACAGTACTACCCTTGGCTTTATATTGGTTTAGCTTCCCTGTTTGGCTTACTGGTAGGCAGCTTTCTTAA
CGTCGTCATCTACCGCCTACCAAAAATAATGGAACTGGAGTGGCGCCAAGAGTGTGCAGAGTCCTTTCCTGAATACAAAA
TATCACCGCCGACAGAAACCCTAACATTAAGCACGCCGCGTTCAAGTTGTCCTTCGTGTCATACCCCAATACGAGTTCGA
GATAATATTCCTGTCTTTAGTTGGCTAGCTCTAAGAGGAAAATGTCACCATTGCCAGACGAAAATCAGTGCTCGCTATCC
TTTTGTTGAAGCACTGAGCGCCTTTTTGTGCGGCCTAATCGCTTGGAAGTTCGGCTATGCACCAATTACCGTAGCACTGA
TTGGGTTTACTTTAGTCTTGATCGCCGCCACCTTCATCGACTTAGATACCATGCTACTGCCTGATCAGCTGACACTGCCG
CTGACGTGGGCTGGCATTGCGCTAGCGTTACTTGAGATAAGCCCAGTATCTCTGCAAGATTCAGTGATCGGTGCGATGGC
GGGTTATCTCTGCCTTTGGAGCGTTTATCACCTTTTCCGCTTGCTGACAGGAAAAGAAGGCATGGGTTACGGAGACTTTA
AATTGCTTGCGGCACTTGGAGCTTGGCTCGGCTGGCAATATCTACCGATGATCATCTTACTCTCTTCGGTTGTCGGGTTG
ATCTTTGGTCTCATTCAACTCAGATTGCAAAAACAAGGCATTGAGATGGCTTTCCCATTTGGGCCTTATCTAGCCATTGC
TGGTTGGGTCGCCTTGATGTGGGGAGATAGCTTGATGTCTTGGTATCTCAATTATCTTATAGGGGCATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio campbellii strain DS40M4 |
77.855 |
100 |
0.779 |
| pilD | Vibrio cholerae strain A1552 |
71.875 |
99.654 |
0.716 |
| pilD | Acinetobacter nosocomialis M2 |
53.986 |
95.502 |
0.516 |
| pilD | Acinetobacter baumannii D1279779 |
53.986 |
95.502 |
0.516 |
| pilD | Neisseria gonorrhoeae MS11 |
47.636 |
95.156 |
0.453 |