Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   VVCECT4999_RS03095 Genome accession   NZ_CP014636
Coordinates   612787..613305 (+) Length   172 a.a.
NCBI ID   WP_017421185.1    Uniprot ID   A0A087ID55
Organism   Vibrio vulnificus strain CECT 4999     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 607787..618305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VVCECT4999_RS03085 (VVCECT4999_03050) gshA 610528..612093 (+) 1566 WP_039448934.1 glutamate--cysteine ligase -
  VVCECT4999_RS03090 (VVCECT4999_03055) - 612104..612736 (+) 633 WP_039448932.1 hypothetical protein -
  VVCECT4999_RS03095 (VVCECT4999_03060) luxS 612787..613305 (+) 519 WP_017421185.1 S-ribosylhomocysteine lyase Regulator
  VVCECT4999_RS03100 (VVCECT4999_03065) - 613364..614641 (-) 1278 WP_039448930.1 HlyC/CorC family transporter -
  VVCECT4999_RS03105 (VVCECT4999_03070) - 614728..615522 (-) 795 WP_011079539.1 cytochrome C assembly family protein -
  VVCECT4999_RS03110 (VVCECT4999_03075) ffh 615736..617112 (+) 1377 WP_011079540.1 signal recognition particle protein -
  VVCECT4999_RS03115 (VVCECT4999_03080) rpsP 617415..617663 (+) 249 WP_011079541.1 30S ribosomal protein S16 -
  VVCECT4999_RS03120 (VVCECT4999_03085) rimM 617679..618227 (+) 549 WP_038941427.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19024.86 Da        Isoelectric Point: 5.2451

>NTDB_id=172853 VVCECT4999_RS03095 WP_017421185.1 612787..613305(+) (luxS) [Vibrio vulnificus strain CECT 4999]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRKHLNGASVEIIDISP
MGCRTGFYMSLIGEPTEQQVAAAWTASMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAQNILAVGISVNRNDELA
LPEAMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=172853 VVCECT4999_RS03095 WP_017421185.1 612787..613305(+) (luxS) [Vibrio vulnificus strain CECT 4999]
ATGCCATTATTAGATAGTTTTACCGTTGACCACACTCGCATGCATGCACCCGCGGTGCGTGTGGCAAAAACCATGCAAAC
GCCAAAAGGCGACACCATTACCGTGTTTGACTTACGTTTCACTGCACCTAACAAAGATATTTTGTCAGAGAAAGGCATTC
ACACTTTAGAGCACCTGTACGCAGGCTTTATGCGTAAGCATCTCAATGGCGCCTCGGTTGAGATCATCGATATCTCACCG
ATGGGCTGTCGTACCGGTTTCTACATGAGTTTGATTGGCGAGCCGACCGAACAACAAGTGGCGGCGGCGTGGACGGCTTC
GATGGAAGATGTGTTGAAAGTGGAAAGCCAAAACAAGATCCCTGAGTTGAACGAGTATCAGTGTGGTACCGCGGCCATGC
ATTCGCTAGATGAAGCGAAGCAAATTGCTCAAAATATCTTAGCGGTTGGTATTTCAGTCAATAGAAACGATGAGCTAGCA
TTGCCAGAAGCAATGCTAAAAGAGCTCAAAGTCGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A087ID55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.719

99.419

0.872

Multiple sequence alignment