Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   GS3922_RS10050 Genome accession   NZ_CP014342
Coordinates   2058139..2059383 (-) Length   414 a.a.
NCBI ID   WP_063166235.1    Uniprot ID   -
Organism   Geobacillus subterraneus strain KCTC3922(T)     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2053139..2064383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GS3922_RS10035 (GS3922_10035) recA 2054126..2054941 (-) 816 WP_225995659.1 recombinase RecA Machinery gene
  GS3922_RS10040 (GS3922_10040) ltrA 2055012..2056829 (-) 1818 WP_063166233.1 group II intron reverse transcriptase/maturase -
  GS3922_RS10045 (GS3922_10045) - 2057665..2057958 (-) 294 Protein_2032 DNA recombination/repair protein RecA -
  GS3922_RS10050 (GS3922_10050) cinA 2058139..2059383 (-) 1245 WP_063166235.1 competence/damage-inducible protein A Machinery gene
  GS3922_RS10055 (GS3922_10055) pgsA 2059410..2059988 (-) 579 WP_063166236.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GS3922_RS10060 (GS3922_10060) - 2060067..2060951 (-) 885 WP_063166237.1 helix-turn-helix domain-containing protein -
  GS3922_RS10065 (GS3922_10065) - 2060976..2061767 (-) 792 WP_063166238.1 DUF3388 domain-containing protein -
  GS3922_RS10070 (GS3922_10070) - 2061895..2062143 (-) 249 WP_063166239.1 DUF3243 domain-containing protein -
  GS3922_RS10075 (GS3922_10075) ymfI 2062207..2062923 (-) 717 WP_063166240.1 elongation factor P 5-aminopentanone reductase -
  GS3922_RS10080 (GS3922_10080) yfmH 2062981..2064270 (-) 1290 WP_063166241.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 44469.90 Da        Isoelectric Point: 5.5325

>NTDB_id=170518 GS3922_RS10050 WP_063166235.1 2058139..2059383(-) (cinA) [Geobacillus subterraneus strain KCTC3922(T)]
MNAEIIAVGSELLLGQIANTNAQFLSQQLAELGINVYFHTAVGDNAARLEQAVNVAQTRADLILFTGGLGPTKDDLTKET
IARLLGRRLVTDEEALRAIEAYFVRTNRPMTENNKKQALVLEGSAVLKNEHGMAPGMALSVNGITYMLLPGPPKEMRPMF
TKYGRAFLRSAFSLSERIESRVLRFFGIGESALETALADLIDAQSNPTIAPLAGDGEVTLRLTAKHRDGAEAKRLLDETE
AAILMRVGRYCYGYNDETLFTKTIERLKERGWTVAAAESLTGGWFLEQLTAIAGASAVVQGGVVCYTNGVKEQVLGVPQP
LLETDGAVSEPCARLLAENVRAMCGADVGISFTGVAGPDPLEGHPPGTVYVGIAVRGRDTAVHRLTLSGTRDDIRVRTAK
YGCFFLLETLAAGG

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=170518 GS3922_RS10050 WP_063166235.1 2058139..2059383(-) (cinA) [Geobacillus subterraneus strain KCTC3922(T)]
TTGAATGCGGAAATTATCGCTGTCGGCTCCGAGTTGCTGCTCGGACAAATTGCCAACACGAACGCCCAGTTTTTGTCGCA
GCAGCTCGCCGAACTTGGCATTAACGTCTATTTCCATACCGCCGTCGGCGACAATGCTGCCCGTCTTGAACAGGCGGTCA
ACGTAGCGCAGACGAGGGCGGACTTAATCCTTTTTACCGGCGGGCTCGGCCCGACAAAAGACGATTTGACGAAAGAGACG
ATCGCCCGCCTGCTCGGCCGCCGGCTCGTCACTGACGAGGAGGCGTTGCGGGCGATTGAAGCGTACTTTGTCCGCACGAA
CCGGCCAATGACAGAAAACAACAAAAAGCAGGCGCTCGTTTTGGAAGGATCGGCAGTGTTGAAAAACGAGCACGGCATGG
CGCCGGGGATGGCGCTTTCAGTCAATGGCATTACATACATGCTGCTGCCCGGGCCGCCGAAAGAAATGAGGCCGATGTTT
ACAAAATACGGGCGCGCGTTTTTGCGCAGTGCATTTTCGCTTTCAGAGCGCATCGAATCGCGCGTGCTTCGCTTTTTTGG
CATCGGTGAATCGGCGCTGGAAACAGCGCTCGCCGATTTGATTGACGCCCAGTCCAACCCGACGATCGCCCCGCTGGCCG
GCGATGGGGAAGTGACGCTCCGCCTGACGGCGAAGCACCGGGACGGGGCGGAAGCGAAACGGTTGCTTGATGAAACGGAA
GCGGCCATTTTGATGCGCGTCGGCCGCTATTGTTACGGATATAACGACGAAACGTTGTTTACGAAAACGATCGAACGGTT
AAAAGAAAGAGGATGGACGGTCGCTGCAGCTGAGAGTCTGACCGGCGGGTGGTTTCTCGAACAGCTGACAGCCATCGCGG
GCGCGTCGGCTGTCGTGCAAGGCGGCGTCGTCTGCTACACAAACGGCGTGAAAGAACAGGTGCTTGGTGTACCGCAGCCG
CTGCTTGAGACGGACGGGGCGGTGAGCGAACCGTGCGCCCGCTTGCTTGCCGAAAACGTCCGTGCGATGTGCGGCGCTGA
TGTTGGCATCAGCTTTACCGGCGTCGCTGGCCCCGACCCGCTTGAGGGCCACCCGCCCGGCACCGTTTATGTCGGCATCG
CCGTCCGCGGGCGTGACACAGCCGTCCACCGCCTCACCTTATCCGGCACGCGCGATGACATTCGCGTCCGCACCGCCAAA
TACGGTTGCTTCTTTTTGTTAGAGACGCTCGCGGCCGGCGGCTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

60.391

98.792

0.597
  cinA Streptococcus mitis SK321

48.395

97.826

0.473
  cinA Streptococcus pneumoniae TIGR4

48.395

97.826

0.473
  cinA Streptococcus mitis NCTC 12261

48.148

97.826

0.471
  cinA Streptococcus pneumoniae Rx1

48.148

97.826

0.471
  cinA Streptococcus pneumoniae R6

48.148

97.826

0.471
  cinA Streptococcus pneumoniae D39

47.901

97.826

0.469
  cinA Streptococcus mutans UA159

47.619

96.377

0.459
  cinA Streptococcus suis isolate S10

42.328

91.304

0.386

Multiple sequence alignment