Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AXW78_RS17905 Genome accession   NZ_CP014282
Coordinates   3621371..3622609 (-) Length   412 a.a.
NCBI ID   WP_000990698.1    Uniprot ID   A0A9W5K577
Organism   Bacillus thuringiensis strain Bt185     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3616371..3627609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXW78_RS17885 (AXW78_17885) spoVS 3616783..3617043 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  AXW78_RS17890 (AXW78_17890) - 3617193..3617987 (-) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  AXW78_RS17895 (AXW78_17895) rny 3618150..3619715 (-) 1566 WP_000099769.1 ribonuclease Y -
  AXW78_RS17900 (AXW78_17900) recA 3620196..3621227 (-) 1032 WP_001283860.1 recombinase RecA Machinery gene
  AXW78_RS17905 (AXW78_17905) cinA 3621371..3622609 (-) 1239 WP_000990698.1 competence/damage-inducible protein CinA Machinery gene
  AXW78_RS17910 (AXW78_17910) pgsA 3622630..3623208 (-) 579 WP_001052968.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AXW78_RS17915 (AXW78_17915) - 3623273..3624197 (-) 925 Protein_3553 RodZ domain-containing protein -
  AXW78_RS17920 (AXW78_17920) - 3624219..3625004 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  AXW78_RS17925 (AXW78_17925) - 3625144..3625392 (-) 249 WP_000114454.1 DUF3243 domain-containing protein -
  AXW78_RS17930 (AXW78_17930) - 3625468..3626181 (-) 714 WP_000759623.1 SDR family oxidoreductase -
  AXW78_RS17935 (AXW78_17935) - 3626285..3627571 (-) 1287 WP_000411968.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45543.84 Da        Isoelectric Point: 5.3499

>NTDB_id=170194 AXW78_RS17905 WP_000990698.1 3621371..3622609(-) (cinA) [Bacillus thuringiensis strain Bt185]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIEAAEERADILIFTGGLGPTKDDLTKET
IATSLDEELVYDEKALALISNYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGVNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVSEAEKLIQHVED
LILERVGEFFYGYDQEFLHYKAIELLKRKGLTLACAESLTGGFFGNQVTENAGVSSVFKGGVICYHNDVKQHVLRVPEEV
LHTDGAVSKECARYLAENVKDVLKADIGISFTGVAGPDASEQKEPGTVFVGLSIKDEPTVVFPLNLSGSRQQIRERTAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=170194 AXW78_RS17905 WP_000990698.1 3621371..3622609(-) (cinA) [Bacillus thuringiensis strain Bt185]
ATGAATGCTGAGATTATTGCGGTTGGAACTGAATTATTACTTGGACAAATTGCAAATACAAACGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATCGGAATTAACGTGTACTATCATACTGTTGTTGGTGATAATAATAAGCGACTGCAAAAGGCGATTG
AAGCTGCGGAAGAACGTGCTGATATACTTATTTTTACAGGTGGATTAGGACCGACAAAAGATGATTTAACGAAAGAAACG
ATAGCTACTAGTTTAGATGAAGAGCTTGTGTATGATGAAAAGGCATTAGCCTTAATAAGTAATTACTTTAAGCGTACAGG
CCGTGAATTTACGGAGAATAATAAAAAGCAAGCGCTCGTTTTAAATGGAGCAACAGTATTTGCAAATGACCACGGTATGG
CGCCAGGTATGGGGGTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGGCCGCCAAAAGAAATGAAACCAATGTAT
GTAAGTTACGTAGAGCCTTTTTTACGTAATTTTACAACAGGAGAAAACATTTATTCTCGTGTGCTTCGTTTCTTTGGTAT
TGGGGAGTCCCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACAAACCCAACAATTGCCCCGTTAGCAAATG
ATGGAGAAGTGACATTACGTTTAACCGCTAAGCATCAAAATGTTAGCGAAGCGGAGAAACTAATTCAACATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGAATTTTTGCATTATAAGGCAATCGAGTTATTGAA
GAGAAAAGGGTTAACTTTAGCGTGTGCAGAAAGTTTAACAGGTGGTTTTTTTGGAAATCAAGTAACTGAAAACGCTGGTG
TTTCTTCTGTATTTAAAGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTTTTACGTGTGCCTGAAGAAGTA
TTGCATACTGATGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAAGGATGTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGGCCAGATGCTTCAGAACAGAAAGAACCAGGAACAGTATTTGTTGGGCTTTCGA
TTAAGGATGAACCAACTGTAGTCTTTCCTCTTAATTTAAGCGGAAGTCGTCAACAAATTAGAGAACGAACAGCAAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterProScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(258-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.01

100

0.58
  cinA Streptococcus pneumoniae TIGR4

46.539

100

0.473
  cinA Streptococcus mitis SK321

46.301

100

0.471
  cinA Streptococcus pneumoniae Rx1

46.062

100

0.468
  cinA Streptococcus pneumoniae R6

46.062

100

0.468
  cinA Streptococcus pneumoniae D39

45.823

100

0.466
  cinA Streptococcus mitis NCTC 12261

45.585

100

0.464
  cinA Streptococcus mutans UA159

45.729

96.602

0.442
  cinA Streptococcus suis isolate S10

40.318

91.505

0.369

Multiple sequence alignment