Detailed information NTG0169933

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AXG94_RS10970
• Genome accession: NZ_CP014262
• Coordinates: 2585558..2586427 (+)
• Length: 289 a.a.
• NCBI ID: WP_055135083.1
• Uniprot ID: -
• Organism: Pseudomonas corrugata strain RM1-1-4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2580558..2591427

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AXG94_RS10945 (AXG94_10935)	-	2580769..2581065 (+)	297	WP_053192127.1	DUF2845 domain-containing protein	-
AXG94_RS10950 (AXG94_10940)	-	2581369..2581722 (-)	354	WP_024779584.1	BON domain-containing protein	-
AXG94_RS10955 (AXG94_10945)	-	2581995..2582411 (-)	417	WP_055135086.1	pilin	-
AXG94_RS10960 (AXG94_10950)	pilB	2582636..2584336 (+)	1701	WP_053192129.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AXG94_RS10965 (AXG94_10955)	pilC	2584339..2585556 (+)	1218	WP_024779581.1	type II secretion system F family protein	Machinery gene
AXG94_RS10970 (AXG94_10960)	pilD	2585558..2586427 (+)	870	WP_055135083.1	prepilin peptidase	Machinery gene
AXG94_RS10975 (AXG94_10965)	coaE	2586438..2587061 (+)	624	WP_055135082.1	dephospho-CoA kinase	-
AXG94_RS10980 (AXG94_10970)	yacG	2587058..2587264 (+)	207	WP_024779578.1	DNA gyrase inhibitor YacG	-
AXG94_RS10985 (AXG94_10975)	-	2587269..2587484 (-)	216	WP_024779577.1	hypothetical protein	-
AXG94_RS10990 (AXG94_10980)	-	2587548..2588234 (-)	687	WP_024779576.1	energy-coupling factor ABC transporter permease	-
AXG94_RS10995 (AXG94_10985)	-	2588569..2589195 (+)	627	WP_024779575.1	DUF1780 domain-containing protein	-
AXG94_RS11000 (AXG94_10990)	-	2589294..2589467 (+)	174	WP_003185543.1	DUF3094 domain-containing protein	-
AXG94_RS11005 (AXG94_10995)	-	2589549..2590847 (+)	1299	WP_053192131.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31812.94 Da
• Isoelectric Point: 8.3523

>NTDB_id=169933 AXG94_RS10970 WP_055135083.1 2585558..2586427(+) (pilD) [Pseudomonas corrugata strain RM1-1-4]
MPLSEFFVLYPMAFVLAALLLGLIVGSFLNVLVWRLPKMLTREWRLQAHDLLGLPAETPGPAYNLMLPHSHCPHCGHRIR
AWENIPLLSYLALRGRCSSCAAPIGRRYPLTELACAALSAFVAWHFGFGWQAALVMVLSWGLLGMSLIDAEHQLLPDTLV
LPLLWLGLIVNSFGLFVSLNQAVWGAVAGYLALWSVFWIFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVIGVVVLRMRSAPASTQIPFGPYLAIAGWIALLWGGQITDFYWHSVGF

Nucleotide

• Length: 870 bp

>NTDB_id=169933 AXG94_RS10970 WP_055135083.1 2585558..2586427(+) (pilD) [Pseudomonas corrugata strain RM1-1-4]
ATGCCCCTGAGCGAATTCTTCGTGCTTTATCCCATGGCCTTTGTGCTGGCGGCGCTATTGCTCGGGCTGATTGTCGGCAG
CTTCCTCAATGTCCTGGTGTGGCGGTTGCCCAAGATGCTCACCCGGGAATGGCGGCTGCAAGCCCACGACCTGCTGGGCC
TGCCCGCCGAAACACCCGGCCCGGCCTACAACCTGATGCTGCCTCACTCCCATTGCCCTCACTGCGGCCACCGCATCCGG
GCCTGGGAAAATATCCCATTGCTCAGTTACCTCGCACTGCGTGGTCGCTGTTCCAGTTGCGCGGCCCCCATTGGGCGACG
GTATCCCCTGACCGAGCTGGCCTGCGCTGCGCTGTCGGCCTTCGTCGCCTGGCATTTCGGCTTTGGCTGGCAGGCCGCGC
TGGTGATGGTCCTAAGCTGGGGCCTGCTGGGCATGAGTCTGATCGATGCGGAGCATCAGCTACTGCCCGATACACTGGTG
CTGCCGTTGTTGTGGCTGGGGCTGATCGTCAACAGCTTCGGGCTGTTCGTCTCGTTGAACCAGGCGGTATGGGGAGCGGT
GGCCGGCTATCTCGCGCTGTGGTCGGTATTCTGGATCTTCAAGTTGATCACCGGCAAGGAAGGCATGGGCTACGGAGACT
TCAAGCTGCTGGCGATGCTGGGGGCCTGGGGCGGCTGGCAAATTCTGCCGCTGACGCTGCTGCTATCGTCGCTGGTGGGC
GCCGTGATCGGAGTCGTTGTGTTGCGCATGCGAAGTGCCCCGGCTTCGACGCAGATCCCCTTCGGGCCCTATTTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCACTCTGTCGGTTTCTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.873	98.27	0.529
pilD	Vibrio campbellii strain DS40M4	50.526	98.616	0.498
pilD	Neisseria gonorrhoeae MS11	47.387	99.308	0.471
pilD	Acinetobacter baumannii D1279779	46.975	97.232	0.457
pilD	Acinetobacter nosocomialis M2	46.975	97.232	0.457