Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AL552_RS16560 Genome accession   NZ_CP014094
Coordinates   3164684..3165793 (+) Length   369 a.a.
NCBI ID   WP_104970004.1    Uniprot ID   -
Organism   Vibrio diabolicus strain FDAARGOS_96     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3159684..3170793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL552_RS16540 (AL552_24700) rsmB 3160604..3161887 (-) 1284 WP_031848633.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  AL552_RS16545 (AL552_24705) fmt 3161968..3162915 (-) 948 WP_025606610.1 methionyl-tRNA formyltransferase -
  AL552_RS16550 (AL552_24710) def 3162949..3163467 (-) 519 WP_005379068.1 peptide deformylase -
  AL552_RS16555 (AL552_24715) - 3163606..3164700 (+) 1095 WP_074190044.1 LysM peptidoglycan-binding domain-containing protein -
  AL552_RS16560 (AL552_24720) dprA 3164684..3165793 (+) 1110 WP_104970004.1 DNA-processing protein DprA Machinery gene
  AL552_RS16565 (AL552_24725) - 3165796..3166275 (+) 480 WP_104970005.1 DUF494 family protein -
  AL552_RS16570 (AL552_24730) - 3166354..3166923 (+) 570 WP_085344700.1 type I DNA topoisomerase -
  AL552_RS16575 (AL552_24735) - 3166993..3168120 (-) 1128 WP_104970006.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  AL552_RS16580 (AL552_24740) purE 3168125..3168610 (-) 486 WP_005379082.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  AL552_RS16585 (AL552_24745) - 3168810..3169367 (+) 558 WP_046874602.1 L-threonylcarbamoyladenylate synthase -
  AL552_RS16590 (AL552_24750) hemF 3169415..3170332 (+) 918 WP_065645011.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 40147.79 Da        Isoelectric Point: 6.5736

>NTDB_id=168349 AL552_RS16560 WP_104970004.1 3164684..3165793(+) (dprA) [Vibrio diabolicus strain FDAARGOS_96]
MNRRNNDDLAAWLKLSCLPGIGGVKMNKLLARDTPRNIVNFSPEQLQQLGLTTKQIQAWASTDKEVDACLSWFEASTNHH
ILTLTDPLYPPQLKQIVAPPPLLFVEGSPTFLSQPQIAMVGSRNASIDGLQHARHFAAEFVQHDFIVTSGLAIGIDGHAH
DGALQAKGKTIAVLGSGLENIYPARHRGLAQRVIEHGALVSEFRPNAKPRPENFPRRNRIISGLSLGVLVVEAAERSGSL
ITARYALEQGREVFALPASINAPNASGGNQLIRHGACLVEKTKDVLDEIQSLLDWSINQSTDLFSTLNDEEELPFPQLLA
NVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=168349 AL552_RS16560 WP_104970004.1 3164684..3165793(+) (dprA) [Vibrio diabolicus strain FDAARGOS_96]
ATGAATCGACGAAATAACGATGATCTCGCTGCCTGGTTAAAACTGAGTTGTTTACCAGGCATTGGCGGGGTCAAAATGAA
TAAGCTACTGGCAAGAGACACGCCGCGTAACATCGTAAACTTCTCTCCCGAACAGCTACAACAACTTGGGTTAACAACTA
AGCAAATTCAAGCTTGGGCTTCAACAGATAAAGAAGTTGATGCCTGTTTAAGTTGGTTTGAGGCTTCTACAAATCATCAT
ATCCTGACACTGACTGACCCGCTTTATCCACCTCAACTCAAACAAATCGTTGCGCCGCCTCCGTTGTTATTTGTTGAGGG
GAGTCCCACCTTTTTATCGCAACCACAAATTGCCATGGTGGGTAGCCGAAATGCGAGTATTGATGGCTTACAGCATGCAC
GCCACTTTGCCGCCGAATTTGTTCAGCACGATTTTATTGTCACCAGTGGTCTCGCTATAGGCATTGATGGCCATGCGCAT
GATGGTGCGTTGCAAGCAAAAGGTAAGACGATTGCGGTGCTAGGATCTGGCTTAGAAAATATTTATCCGGCACGTCATCG
TGGTTTAGCGCAACGTGTTATTGAACATGGGGCTTTGGTGTCTGAGTTTCGCCCCAACGCCAAGCCGCGCCCGGAAAACT
TCCCGCGTCGAAACCGCATTATTAGCGGATTATCGCTAGGTGTGTTAGTTGTGGAAGCGGCGGAAAGGAGTGGCTCGTTA
ATTACTGCTCGTTACGCGCTTGAGCAAGGTCGAGAAGTGTTTGCGCTGCCAGCTTCGATAAATGCCCCTAATGCCAGCGG
TGGCAACCAGTTGATACGTCATGGTGCTTGCCTCGTAGAAAAGACGAAAGATGTCTTAGATGAAATACAGTCTTTGCTTG
ATTGGTCTATTAACCAGAGTACCGATTTATTTTCTACGTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAGGAAGTCATGATGCAGCT
CTTAGAGTTAGAACTCTCTGGGCATGTCGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(317-362)

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

83.198

100

0.832
  dprA Vibrio cholerae strain A1552

57.027

100

0.572
  dprA Glaesserella parasuis strain SC1401

46.774

100

0.472
  dprA Legionella pneumophila strain ERS1305867

43.767

97.832

0.428
  dprA Haemophilus influenzae Rd KW20

44.957

94.038

0.423
  dprA Neisseria meningitidis strain C311

36.709

100

0.393
  dprA Neisseria meningitidis MC58

36.709

100

0.393
  dprA Neisseria gonorrhoeae MS11

35.369

100

0.377
  dprA Neisseria gonorrhoeae strain FA1090

35.115

100

0.374

Multiple sequence alignment