Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AL542_RS09975 Genome accession   NZ_CP014056
Coordinates   1318514..1319611 (+) Length   365 a.a.
NCBI ID   WP_005500702.1    Uniprot ID   -
Organism   Grimontia hollisae strain FDAARGOS_111     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1313514..1324611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL542_RS09955 (AL542_09840) rsmB 1314542..1315822 (-) 1281 WP_005500718.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  AL542_RS09960 (AL542_09845) fmt 1315896..1316840 (-) 945 WP_005500717.1 methionyl-tRNA formyltransferase -
  AL542_RS09965 (AL542_09850) def 1316848..1317360 (-) 513 WP_005500715.1 peptide deformylase -
  AL542_RS09970 (AL542_09855) - 1317481..1318512 (+) 1032 WP_005500712.1 LysM peptidoglycan-binding domain-containing protein -
  AL542_RS09975 (AL542_09860) dprA 1318514..1319611 (+) 1098 WP_005500702.1 DNA-processing protein DprA Machinery gene
  AL542_RS09980 (AL542_09865) - 1319614..1320090 (+) 477 WP_005500701.1 DUF494 family protein -
  AL542_RS09985 (AL542_09870) - 1320117..1320683 (+) 567 WP_005500700.1 type I DNA topoisomerase -
  AL542_RS09990 (AL542_09875) - 1320744..1321880 (-) 1137 WP_005500699.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  AL542_RS09995 (AL542_09880) purE 1321883..1322368 (-) 486 WP_005500698.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  AL542_RS10000 (AL542_09885) - 1322601..1323158 (+) 558 WP_005500695.1 Sua5/YciO/YrdC/YwlC family protein -
  AL542_RS10005 (AL542_09890) hemF 1323180..1324103 (+) 924 WP_005500694.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 39304.38 Da        Isoelectric Point: 6.9258

>NTDB_id=168135 AL542_RS09975 WP_005500702.1 1318514..1319611(+) (dprA) [Grimontia hollisae strain FDAARGOS_111]
MSRELEWWLRLAAVPRLGGQAVSKIISRYPPHKLEALDDIELAALGLKPAQVQALRHPDFSIIDRCLAWASAPSRHIIAL
TDHRYPYLLKQISGAPPLLFVDGDPRLLSLPQLAIVGSRHASSEGLALAHAFAKELAAHDVVVTSGLALGIDGRAHRGAL
DGQGKTIAVLGSGLDKVYPASHRQLAGDVRDSGALVSELWPWSPPKPAFFPRRNRIISGLSTGVLVVEAAMKSGSLITAR
LALEQGRDVFALPGSIHNPYAKGSNGLIKQGAFLVESVDDILVQVGTLAGCAINHQLEVAQPQDLREELPFPELLANVGN
EVRCVDVLAELCDQPVHEIMMQLLELELQGFVSAVPGGYVRTRRG

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=168135 AL542_RS09975 WP_005500702.1 1318514..1319611(+) (dprA) [Grimontia hollisae strain FDAARGOS_111]
ATGTCACGCGAGCTTGAGTGGTGGCTTAGGCTCGCCGCTGTTCCCCGTTTGGGTGGCCAGGCGGTCAGTAAAATTATCAG
CCGCTATCCACCCCATAAACTTGAGGCGCTTGATGATATTGAGCTTGCCGCGCTGGGACTAAAGCCAGCTCAGGTTCAGG
CACTGCGCCACCCCGATTTTTCCATCATCGACAGATGTCTGGCCTGGGCATCTGCACCGTCCAGACACATTATTGCCCTG
ACCGATCACCGCTATCCCTATCTGCTTAAACAAATCTCTGGCGCGCCGCCACTGCTGTTTGTCGATGGCGATCCGAGACT
GCTTTCCCTTCCTCAATTGGCCATTGTCGGCAGTCGCCACGCATCCAGTGAGGGCCTTGCGTTGGCTCATGCATTTGCCA
AGGAGCTTGCGGCGCATGATGTGGTGGTGACCAGTGGCCTGGCTCTGGGCATTGATGGCCGCGCGCACCGTGGTGCGCTC
GATGGACAGGGAAAAACCATCGCTGTGCTAGGGTCTGGGCTGGATAAGGTGTATCCTGCCAGTCATCGCCAGCTAGCGGG
TGATGTGAGGGATTCTGGTGCACTGGTGTCAGAGCTGTGGCCTTGGTCGCCACCCAAGCCTGCATTTTTCCCGAGACGAA
ACCGGATTATCAGCGGTCTCTCTACTGGTGTGTTAGTGGTGGAGGCAGCCATGAAAAGTGGTTCATTGATTACTGCCAGG
CTGGCGCTTGAACAGGGGCGGGATGTATTTGCGCTGCCTGGCTCGATTCACAACCCATATGCTAAGGGCAGCAACGGGCT
GATAAAGCAGGGCGCTTTTTTAGTGGAGTCCGTCGACGATATTCTGGTGCAAGTCGGCACACTTGCAGGTTGTGCGATTA
ATCACCAACTGGAAGTTGCCCAGCCCCAAGACTTGCGAGAAGAATTGCCATTTCCTGAACTGTTGGCTAACGTAGGAAAT
GAAGTTAGGTGTGTCGATGTGCTTGCAGAACTCTGCGATCAACCCGTTCACGAAATCATGATGCAGTTGTTAGAGCTAGA
GCTACAGGGATTTGTATCCGCAGTACCCGGTGGCTATGTCAGAACGAGGAGGGGATAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(313-358)

DNA recombination-mediator protein A (DNA_processg_A)

(76-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

54.821

99.452

0.545
  dprA Vibrio cholerae strain A1552

51.087

100

0.515
  dprA Glaesserella parasuis strain SC1401

48.641

100

0.49
  dprA Legionella pneumophila strain ERS1305867

43.213

98.904

0.427
  dprA Haemophilus influenzae Rd KW20

44.643

92.055

0.411
  dprA Neisseria meningitidis strain C311

38.56

100

0.411
  dprA Neisseria meningitidis MC58

38.56

100

0.411
  dprA Neisseria gonorrhoeae MS11

41.379

87.397

0.362

Multiple sequence alignment