Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AL539_RS12000 Genome accession   NZ_CP014053
Coordinates   2200500..2201609 (-) Length   369 a.a.
NCBI ID   WP_104975716.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain FDAARGOS_108     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2195500..2206609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL539_RS11970 (AL539_20200) hemF 2195960..2196877 (-) 918 WP_104975713.1 oxygen-dependent coproporphyrinogen oxidase -
  AL539_RS11975 (AL539_20205) - 2196925..2197482 (-) 558 WP_005379084.1 L-threonylcarbamoyladenylate synthase -
  AL539_RS11980 (AL539_20210) purE 2197682..2198167 (+) 486 WP_005379082.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  AL539_RS11985 (AL539_20215) - 2198172..2199305 (+) 1134 WP_104975714.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  AL539_RS11990 (AL539_20220) - 2199372..2199941 (-) 570 WP_104975715.1 type I DNA topoisomerase -
  AL539_RS11995 (AL539_20225) - 2200018..2200497 (-) 480 WP_005379074.1 DUF494 family protein -
  AL539_RS12000 (AL539_20230) dprA 2200500..2201609 (-) 1110 WP_104975716.1 DNA-processing protein DprA Machinery gene
  AL539_RS12005 (AL539_20235) - 2201593..2202687 (-) 1095 WP_017821578.1 LysM peptidoglycan-binding domain-containing protein -
  AL539_RS12010 (AL539_20240) def 2202826..2203344 (+) 519 WP_005379068.1 peptide deformylase -
  AL539_RS12015 (AL539_20245) fmt 2203378..2204325 (+) 948 WP_017635609.1 methionyl-tRNA formyltransferase -
  AL539_RS12020 (AL539_20250) rsmB 2204406..2205689 (+) 1284 WP_025628789.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 40016.75 Da        Isoelectric Point: 6.7150

>NTDB_id=168091 AL539_RS12000 WP_104975716.1 2200500..2201609(-) (dprA) [Vibrio alginolyticus strain FDAARGOS_108]
MNRRNNDDLAAWLKLSCLPGIGGVKMNKLLARDTPRNIVNFSPEQLQQLGLTTKQIQAWASTDKEVDACLSWLEASTNHH
ILTLTDPCYPPQLKQIVAPPPLLFVQGDPTCLSQPQIAMVGSRNASIDGLQHARQFAAEFVQHDFIVTSGLALGIDGHAH
DGALQAGGKTIAVLGSGLENIYPARHRGLAQRVIEHGALVSEFRPNAKPRPENFPRRNRIISGLSLGVLVVEAAKKSGSL
ITARYALEQGREVFALPASINAPHACGGNQLIRHGACLVEKTKDVLDEIQSLLDWSINQSTDLFSTLNDEEELPFPQLLA
NVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=168091 AL539_RS12000 WP_104975716.1 2200500..2201609(-) (dprA) [Vibrio alginolyticus strain FDAARGOS_108]
ATGAATCGACGAAATAACGATGATCTCGCTGCCTGGTTAAAACTGAGTTGTTTGCCAGGCATTGGCGGCGTCAAAATGAA
TAAGCTACTGGCAAGAGACACGCCACGTAACATCGTAAACTTCTCTCCTGAACAGCTACAACAACTTGGGTTAACAACTA
AGCAAATTCAAGCTTGGGCTTCAACAGATAAAGAAGTCGATGCTTGTTTAAGCTGGCTTGAGGCTTCTACAAATCATCAT
ATCCTGACACTGACTGACCCGTGTTATCCACCTCAGCTCAAACAAATCGTTGCACCGCCACCTCTACTTTTTGTTCAAGG
AGACCCTACTTGTCTTTCTCAGCCACAAATCGCGATGGTTGGAAGTCGAAATGCGAGTATTGATGGATTACAGCATGCAC
GTCAGTTTGCTGCAGAGTTTGTTCAGCACGATTTTATTGTCACCAGTGGTCTCGCTTTAGGCATTGATGGTCATGCGCAT
GATGGTGCGTTGCAAGCGGGTGGTAAGACGATTGCGGTGCTAGGATCTGGCTTAGAAAATATTTATCCGGCACGTCATCG
TGGTTTAGCGCAACGTGTTATTGAACATGGGGCTTTGGTGTCTGAGTTTCGGCCTAATGCCAAGCCGCGCCCAGAAAACT
TCCCGCGTCGTAATCGTATTATTAGTGGATTATCGCTTGGTGTACTGGTCGTCGAGGCGGCGAAAAAGAGCGGCTCGTTA
ATTACAGCTCGTTACGCGCTTGAGCAAGGTCGAGAAGTATTTGCGCTGCCAGCGTCAATCAATGCCCCCCATGCCTGCGG
TGGAAACCAGTTGATACGTCATGGCGCTTGCCTCGTAGAAAAGACGAAAGATGTCTTAGATGAAATACAGTCCTTGCTTG
ATTGGTCTATTAATCAGAGTACCGATTTATTTTCTACGTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGTTAGAACTCTCTGGGCATGTCGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(317-362)

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

83.198

100

0.832
  dprA Vibrio cholerae strain A1552

57.027

100

0.572
  dprA Glaesserella parasuis strain SC1401

46.237

100

0.466
  dprA Legionella pneumophila strain ERS1305867

44.875

97.832

0.439
  dprA Haemophilus influenzae Rd KW20

44.957

94.038

0.423
  dprA Neisseria meningitidis strain C311

37.374

100

0.401
  dprA Neisseria meningitidis MC58

37.374

100

0.401
  dprA Neisseria gonorrhoeae MS11

35.787

100

0.382
  dprA Neisseria gonorrhoeae strain FA1090

35.533

100

0.379

Multiple sequence alignment