Detailed information NTG0167961

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: WH25_RS00980
• Genome accession: NZ_CP017295
• Coordinates: 185176..186261 (-)
• Length: 361 a.a.
• NCBI ID: WP_008808045.1
• Uniprot ID: -
• Organism: Streptococcus gordonii strain IE35
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 180176..191261

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WH25_RS00965 (WH25_00965)	-	180611..182233 (-)	1623	WP_046164775.1	ATP-binding cassette domain-containing protein	-
WH25_RS00970 (WH25_00970)	trpS	182463..183485 (+)	1023	WP_046164776.1	tryptophan--tRNA ligase	-
WH25_RS00975 (WH25_00975)	guaB	183590..185071 (+)	1482	WP_008808044.1	IMP dehydrogenase	-
WH25_RS00980 (WH25_00980)	recF	185176..186261 (-)	1086	WP_008808045.1	DNA replication/repair protein RecF	Machinery gene
WH25_RS00985 (WH25_00985)	yaaA	186263..186655 (-)	393	WP_046164777.1	S4 domain-containing protein YaaA	-
WH25_RS00990 (WH25_00990)	yfmF	186810..188057 (+)	1248	WP_046164778.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
WH25_RS00995 (WH25_00995)	yfmH	188057..189352 (+)	1296	WP_046164779.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
WH25_RS01000 (WH25_01000)	rodZ	189599..190429 (+)	831	WP_046164780.1	cytoskeleton protein RodZ	-
WH25_RS01005 (WH25_01005)	pgsA	190438..190977 (+)	540	WP_008808050.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-

Sequence

Protein

• Length: 361 a.a.
• Molecular weight: 41782.00 Da
• Isoelectric Point: 9.0329

>NTDB_id=167961 WH25_RS00980 WP_008808045.1 185176..186261(-) (recF) [Streptococcus gordonii strain IE35]
MWLKSLTLKHFRNYQDAEINFHSGLNVFLGQNAQGKTNILESIYFLALTRSHRTRSDKDFIHFQEKDLKVSGILEKKTGT
IPLDIELTAKGRITKINHLKQNRLSDYIGTMNVVLFAPEDLQLIKGSPSLRRKFIDIELGQIKPLYLADLSNYNHVLKQR
NSYLKNSQKIDENFLSVLDEQLIEYGCRVVKHRLDFLKKLEIFAQEKHLDISQKKETLTIDYLSSVPLQDIDSIEESFRQ
SLSKNRKRDLFKQNTGVGPHRDDIAFFINQMDANYGSQGQHRSVVLSLKLAEIKLIENITKESPILLLDDVMSELDNDRQ
LKLLETISQEIQTFITTTTLEHLKNLPKDIKIFEISNGNIK

Nucleotide

• Length: 1086 bp

>NTDB_id=167961 WH25_RS00980 WP_008808045.1 185176..186261(-) (recF) [Streptococcus gordonii strain IE35]
ATGTGGCTAAAATCACTGACTCTTAAACATTTTCGTAATTATCAAGACGCGGAAATCAACTTTCACTCTGGTCTAAACGT
TTTTCTTGGTCAAAATGCACAAGGAAAAACAAATATTCTAGAATCAATTTATTTCTTAGCATTGACACGTAGTCATCGAA
CCAGATCAGACAAAGATTTTATTCATTTTCAAGAAAAAGATCTCAAAGTATCAGGTATCCTTGAAAAAAAGACAGGAACG
ATTCCGCTTGACATCGAGTTGACAGCTAAGGGACGTATTACTAAAATCAATCATCTCAAGCAAAATAGACTTTCCGACTA
TATTGGGACAATGAATGTTGTTCTGTTTGCGCCAGAAGATTTACAACTTATTAAAGGTTCGCCTTCATTAAGACGAAAAT
TTATAGACATTGAATTGGGGCAAATCAAGCCTCTTTATCTAGCAGATCTTTCCAATTACAATCATGTTCTTAAACAAAGA
AATTCTTATCTAAAGAACAGTCAAAAAATTGATGAGAATTTTCTATCTGTTTTAGATGAACAGCTTATTGAATATGGTTG
TCGTGTGGTCAAACATCGCTTAGACTTCTTAAAAAAACTCGAAATATTCGCCCAGGAAAAACACCTTGATATCTCACAAA
AAAAAGAAACTCTAACTATTGACTATCTATCCTCTGTACCTTTACAAGATATTGACAGTATTGAAGAAAGTTTTAGACAA
AGCCTAAGTAAAAATCGAAAAAGAGATTTATTTAAACAAAATACTGGTGTAGGTCCTCATCGAGATGATATAGCTTTCTT
TATCAATCAAATGGATGCTAATTATGGAAGTCAGGGGCAACACAGAAGTGTAGTACTCTCTCTTAAATTAGCAGAAATAA
AATTGATTGAAAATATAACAAAAGAATCTCCTATCCTCCTGCTTGACGATGTGATGAGTGAACTTGACAATGATCGTCAA
CTTAAATTGCTAGAAACAATTTCTCAAGAAATACAAACTTTTATTACCACAACTACTTTGGAACACCTAAAAAATCTACC
TAAAGATATCAAAATTTTTGAAATTTCAAATGGAAATATAAAATAG

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	71.229	99.169	0.706
recF	Bacillus subtilis subsp. subtilis str. 168	44.715	100	0.457