Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AL541_RS15690 Genome accession   NZ_CP014040
Coordinates   3138315..3139424 (-) Length   369 a.a.
NCBI ID   WP_104979873.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain FDAARGOS_110     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3133315..3144424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL541_RS15655 (AL541_24025) hemF 3133775..3134692 (-) 918 WP_047104448.1 oxygen-dependent coproporphyrinogen oxidase -
  AL541_RS15660 (AL541_24030) - 3134740..3135297 (-) 558 WP_005379084.1 L-threonylcarbamoyladenylate synthase -
  AL541_RS15665 (AL541_24035) purE 3135498..3135983 (+) 486 WP_104979868.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  AL541_RS15670 (AL541_24040) - 3135988..3137121 (+) 1134 WP_104979869.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  AL541_RS15675 (AL541_24045) - 3137187..3137756 (-) 570 WP_017821580.1 type I DNA topoisomerase -
  AL541_RS15685 (AL541_24055) - 3137833..3138312 (-) 480 WP_005379074.1 DUF494 family protein -
  AL541_RS15690 (AL541_24060) dprA 3138315..3139424 (-) 1110 WP_104979873.1 DNA-processing protein DprA Machinery gene
  AL541_RS15695 (AL541_24065) - 3139408..3140502 (-) 1095 WP_104979874.1 LysM peptidoglycan-binding domain-containing protein -
  AL541_RS15700 (AL541_24070) def 3140641..3141159 (+) 519 WP_005379068.1 peptide deformylase -
  AL541_RS15705 (AL541_24075) fmt 3141193..3142140 (+) 948 WP_104979876.1 methionyl-tRNA formyltransferase -
  AL541_RS15710 (AL541_24080) rsmB 3142223..3143506 (+) 1284 WP_104979878.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 40075.80 Da        Isoelectric Point: 7.0083

>NTDB_id=167847 AL541_RS15690 WP_104979873.1 3138315..3139424(-) (dprA) [Vibrio alginolyticus strain FDAARGOS_110]
MNRRNNDDLAAWLKLSCLPGIGGVKMNKLLARDTPRNIVNFSPEQLQQLGLTTKQIQAWTSTDKEVDACLSWLEASTNHH
ILTLTDPRYPPQLKQIVAPPPLLFVQGNPTCLSQPQIAMVGSRNASIDGLQHARQFAAEFVQHDFIVTSGLALGIDGHAH
DGALQAGGKTIAVLGSGLENIYPARHRGLAQRVIEHGALVSEFRPNAKPRPENFPRRNRIISGLSLGVLVVEAAKKSGSL
ITARYALEQGREVFALPASINAPNACGGNQLIRHGACLVEKTKDVLDEIQSLLDWSINQSTDLFSTLNDEEELPFPQLLA
NVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=167847 AL541_RS15690 WP_104979873.1 3138315..3139424(-) (dprA) [Vibrio alginolyticus strain FDAARGOS_110]
ATGAATCGACGAAATAACGATGATCTCGCTGCCTGGTTAAAACTGAGTTGTTTACCAGGCATTGGCGGCGTCAAAATGAA
TAAGCTACTGGCAAGAGACACGCCACGTAACATCGTAAACTTCTCTCCTGAACAGCTACAACAACTTGGGTTAACAACTA
AGCAAATTCAAGCTTGGACTTCAACAGATAAAGAAGTCGATGCTTGTTTAAGCTGGCTTGAGGCTTCTACAAACCATCAT
ATCCTGACACTGACTGACCCGCGTTATCCACCTCAACTCAAACAAATCGTTGCGCCGCCACCTCTACTTTTTGTTCAAGG
AAACCCTACTTGTCTCTCTCAGCCACAAATCGCGATGGTTGGCAGTCGAAATGCGAGTATTGATGGATTACAGCATGCAC
GTCAGTTTGCTGCAGAGTTTGTTCAGCACGATTTTATTGTCACCAGTGGTCTCGCTTTAGGCATTGATGGTCATGCGCAT
GATGGCGCGTTGCAAGCGGGTGGTAAGACGATTGCGGTGCTAGGATCTGGCTTAGAAAATATTTATCCGGCACGTCATCG
TGGTTTAGCGCAACGTGTTATTGAACATGGGGCTTTGGTGTCTGAGTTTCGGCCTAATGCCAAGCCGCGCCCAGAAAACT
TCCCGCGTCGTAATCGTATTATTAGTGGATTATCGCTTGGTGTACTGGTCGTCGAGGCGGCGAAAAAGAGCGGCTCGTTA
ATTACAGCTCGTTACGCGCTTGAGCAAGGTCGAGAAGTATTTGCGCTGCCAGCGTCAATCAATGCCCCCAATGCCTGCGG
TGGAAACCAGTTGATACGTCATGGCGCTTGCCTAGTAGAAAAGACGAAAGATGTCTTAGATGAAATACAGTCCTTGCTTG
ATTGGTCTATTAATCAGAGTACCGATTTATTTTCTACGTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGTTAGAACTCTCTGGGCATGTCGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)

DprA winged helix domain (DprA_WH)

(317-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

83.469

100

0.835
  dprA Vibrio cholerae strain A1552

57.297

100

0.575
  dprA Glaesserella parasuis strain SC1401

46.505

100

0.469
  dprA Legionella pneumophila strain ERS1305867

44.875

97.832

0.439
  dprA Haemophilus influenzae Rd KW20

45.245

94.038

0.425
  dprA Neisseria meningitidis strain C311

37.374

100

0.401
  dprA Neisseria meningitidis MC58

37.374

100

0.401
  dprA Neisseria gonorrhoeae MS11

35.787

100

0.382
  dprA Neisseria gonorrhoeae strain FA1090

35.533

100

0.379

Multiple sequence alignment