Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AL537_RS04365 Genome accession   NZ_CP014036
Coordinates   876225..877334 (-) Length   369 a.a.
NCBI ID   WP_104971083.1    Uniprot ID   -
Organism   Vibrio diabolicus strain FDAARGOS_105     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 871225..882334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL537_RS04335 (AL537_04335) hemF 871686..872603 (-) 918 WP_065645011.1 oxygen-dependent coproporphyrinogen oxidase -
  AL537_RS04340 (AL537_04340) - 872651..873208 (-) 558 WP_046874602.1 L-threonylcarbamoyladenylate synthase -
  AL537_RS04345 (AL537_04345) purE 873408..873893 (+) 486 WP_005379082.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  AL537_RS04350 (AL537_04350) - 873898..875025 (+) 1128 WP_104971081.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  AL537_RS04355 (AL537_04355) - 875095..875664 (-) 570 WP_104971082.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  AL537_RS04360 (AL537_04360) - 875743..876222 (-) 480 WP_033906575.1 DUF494 family protein -
  AL537_RS04365 (AL537_04365) dprA 876225..877334 (-) 1110 WP_104971083.1 DNA-processing protein DprA Machinery gene
  AL537_RS04370 (AL537_04370) - 877318..878412 (-) 1095 WP_104971084.1 LysM peptidoglycan-binding domain-containing protein -
  AL537_RS04375 (AL537_04375) def 878551..879069 (+) 519 WP_005379068.1 peptide deformylase -
  AL537_RS04380 (AL537_04380) fmt 879103..880050 (+) 948 WP_104971085.1 methionyl-tRNA formyltransferase -
  AL537_RS04385 (AL537_04385) rsmB 880132..881415 (+) 1284 WP_104971086.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 40097.85 Da        Isoelectric Point: 7.2248

>NTDB_id=167740 AL537_RS04365 WP_104971083.1 876225..877334(-) (dprA) [Vibrio diabolicus strain FDAARGOS_105]
MNRRNNDDLAAWLKLSCLPGIGGVKMNKLLTRDTPRNIVNFSPEQLQQLGLTTKQIQAWASTDKEVDACLSWFEASTNHH
ILTLTDPRYPPQLKQIVAPPPLLFVQGNPTCLSQPQIAMVGSRNASIDGLQHARQFAAEFVQHDFIVTSGLALGIDGHAH
DGALQAGGKTIAVLGSGLANIYPARHRSLAQRVIEHGALVSEFRPNAKPRPENFPRRNRIISGLSLGVLVVEAAKKSGSL
ITARYALEQGREVFALPASINAPNACGGNQLIRHGACLVEKTKDVLDEIQSLLDWSINQSTDLFSTLNDEEELPFPQLLA
NVGSEATLVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=167740 AL537_RS04365 WP_104971083.1 876225..877334(-) (dprA) [Vibrio diabolicus strain FDAARGOS_105]
ATGAATCGACGAAATAACGATGATCTCGCTGCCTGGTTAAAACTGAGTTGTTTACCAGGCATTGGCGGGGTCAAAATGAA
TAAGCTACTGACAAGAGACACGCCGCGTAACATCGTAAACTTCTCTCCCGAACAGCTACAACAACTTGGGTTAACAACTA
AGCAAATTCAAGCTTGGGCTTCAACAGATAAAGAAGTTGATGCCTGTTTAAGTTGGTTTGAGGCTTCTACAAATCATCAT
ATCCTGACACTGACTGACCCGCGTTATCCACCTCAACTCAAACAAATCGTTGCACCGCCACCTCTACTTTTTGTTCAAGG
AAACCCTACTTGTCTCTCTCAGCCACAAATCGCGATGGTTGGCAGTCGAAATGCGAGTATTGATGGATTACAGCATGCAC
GTCAGTTTGCTGCAGAGTTTGTTCAGCACGATTTTATTGTCACCAGTGGTCTCGCTTTAGGCATTGATGGTCATGCGCAT
GATGGTGCGTTGCAAGCGGGTGGTAAGACGATTGCGGTGCTAGGATCTGGTTTAGCAAATATTTATCCAGCACGTCATCG
TAGTTTAGCGCAACGTGTTATTGAACACGGGGCTTTGGTGTCTGAGTTTCGGCCTAATGCCAAGCCGCGCCCAGAAAACT
TCCCGCGTCGTAATCGTATTATTAGTGGATTATCGCTTGGTGTACTGGTCGTCGAGGCGGCGAAAAAGAGCGGCTCGTTA
ATTACAGCTCGTTACGCGCTTGAGCAAGGTCGAGAAGTATTTGCGCTGCCAGCGTCAATCAATGCCCCCAATGCCTGCGG
TGGAAACCAGTTGATACGTCATGGCGCTTGCCTCGTAGAAAAGACGAAAGATGTCTTAGATGAAATACAGTCCTTGCTTG
ATTGGTCTATTAATCAGAGTACCGATTTATTTTCTACGTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAGTGAAGCTACACTGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAGGAAGTCATGATGCAGCT
CTTAGAGTTAGAACTCTCTGGGCATGTCGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)

DprA winged helix domain (DprA_WH)

(317-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

82.656

100

0.827
  dprA Vibrio cholerae strain A1552

56.486

100

0.566
  dprA Glaesserella parasuis strain SC1401

46.505

100

0.469
  dprA Legionella pneumophila strain ERS1305867

44.598

97.832

0.436
  dprA Haemophilus influenzae Rd KW20

44.957

94.038

0.423
  dprA Neisseria meningitidis strain C311

37.215

100

0.398
  dprA Neisseria meningitidis MC58

37.215

100

0.398
  dprA Neisseria gonorrhoeae MS11

35.623

100

0.379
  dprA Neisseria gonorrhoeae strain FA1090

35.369

100

0.377

Multiple sequence alignment