Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AUL54_RS02155 Genome accession   NZ_CP013950
Coordinates   510493..511743 (-) Length   416 a.a.
NCBI ID   WP_060962761.1    Uniprot ID   -
Organism   Bacillus sp. SDLI1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 505493..516743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUL54_RS02140 (AUL54_02140) rny 506078..507637 (-) 1560 WP_016936061.1 ribonuclease Y -
  AUL54_RS02145 (AUL54_02145) - 507930..509111 (-) 1182 WP_060962760.1 serine hydrolase domain-containing protein -
  AUL54_RS02150 (AUL54_02150) recA 509278..510321 (-) 1044 WP_015417498.1 recombinase RecA Machinery gene
  AUL54_RS02155 (AUL54_02155) cinA 510493..511743 (-) 1251 WP_060962761.1 competence/damage-inducible protein A Machinery gene
  AUL54_RS02160 (AUL54_02160) pgsA 511761..512342 (-) 582 WP_016936065.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AUL54_RS02165 (AUL54_02165) - 512416..513303 (-) 888 WP_047474929.1 RodZ domain-containing protein -
  AUL54_RS02170 (AUL54_02170) - 513322..514113 (-) 792 WP_007409819.1 YmfK family protein -
  AUL54_RS02175 (AUL54_02175) - 514244..514501 (-) 258 WP_060962762.1 DUF3243 domain-containing protein -
  AUL54_RS02180 (AUL54_02180) - 514577..515305 (-) 729 WP_060965039.1 SDR family oxidoreductase -
  AUL54_RS02185 (AUL54_02185) - 515364..516650 (-) 1287 WP_016936068.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45048.25 Da        Isoelectric Point: 5.1463

>NTDB_id=166443 AUL54_RS02155 WP_060962761.1 510493..511743(-) (cinA) [Bacillus sp. SDLI1]
MEIAKKAEIIAVGSELLLGQIANTNAQFISKELAEIGVNVFYHTAVGDNPERLKQVIRTAEERSDLIIFSGGLGPTKDDL
TKETIANTMGRPLVLNDEAFRSIEEYFAKTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLAEHGSRLYMLLPGPPSEL
RPMFENEAKPLLLKKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEASILERVGEFFYGYDDTSLVKELSKACRQNGITISSAESFTGGLFSEWVTDLSGASQLFAGGVVCYSDSVKQHVLG
VKAETLADSGAVSKECARELAAGVRKLTGSDIGISFTGVAGPDPQEGHAPGRVFIGISAEGKEEVHEFNFAGSRTGIRKR
AAKYGCHLILKMLDQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=166443 AUL54_RS02155 WP_060962761.1 510493..511743(-) (cinA) [Bacillus sp. SDLI1]
ATGGAAATAGCAAAAAAAGCGGAAATCATTGCAGTCGGCTCAGAGCTTCTGCTCGGCCAGATCGCCAATACGAACGCTCA
GTTTATCAGTAAAGAGCTGGCGGAAATCGGCGTAAACGTGTTTTACCACACCGCTGTCGGTGACAATCCGGAGCGGCTTA
AGCAAGTCATCCGCACTGCCGAAGAGCGCTCGGACCTGATTATTTTTTCAGGCGGCCTCGGACCGACCAAGGACGATTTA
ACAAAAGAAACCATTGCAAACACAATGGGACGCCCGCTCGTTCTGAATGACGAAGCGTTCCGGTCGATTGAAGAGTATTT
CGCGAAAACAAAACGGACCATGTCGCCGAATAACCGCAAACAGGCGCTCGTTATTGAGGGCTCGGACGTTTTGGCGAATC
ATTTCGGCATGGCGCCGGGAATGCTTGCAGAGCACGGATCAAGGCTTTATATGCTGCTTCCCGGACCGCCGAGCGAGCTG
CGTCCGATGTTTGAAAATGAAGCGAAGCCGCTGCTTCTTAAAAAGCTCGGTTCAAATGAGAAAATCGTTTCAACCGTGCT
GCGGTTTTTCGGAATCGGTGAATCTCAGCTTGAAGCTGATTTAGAAGATATCATTGACGCGCAGACGAATCCGACGATTG
CGCCGCTTGCCGCTGACGGTGAGGTCACGCTGCGTTTAACGGCGAAACATGCCGATGAAAAAGAAACAGAACGGCTTTTA
AAAGAAACGGAAGCCTCCATTTTAGAACGTGTCGGTGAATTTTTCTACGGATATGATGATACGTCCCTGGTGAAGGAGCT
TTCAAAAGCATGCAGACAGAACGGAATCACGATTTCCTCTGCCGAAAGCTTTACAGGCGGACTGTTTTCAGAGTGGGTGA
CTGATTTAAGCGGCGCGTCTCAACTTTTTGCAGGGGGCGTTGTCTGTTATTCCGACAGCGTGAAACAGCATGTGCTCGGC
GTGAAAGCTGAGACGCTGGCAGATAGCGGAGCGGTCAGCAAAGAGTGCGCGCGCGAGCTTGCCGCCGGTGTCAGAAAGCT
GACCGGAAGCGATATCGGTATCAGCTTTACCGGAGTTGCGGGCCCGGATCCGCAGGAAGGGCATGCCCCGGGCCGTGTCT
TTATCGGCATTTCCGCGGAAGGAAAAGAAGAGGTGCATGAATTTAACTTTGCCGGATCAAGAACCGGAATCAGAAAGCGC
GCCGCTAAATACGGCTGCCATCTCATTTTAAAAATGCTGGATCAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Competence-damaged protein (CinA)

(261-413)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

89.904

100

0.899
  cinA Streptococcus mitis NCTC 12261

47.129

100

0.474
  cinA Streptococcus mitis SK321

46.651

100

0.469
  cinA Streptococcus pneumoniae TIGR4

46.172

100

0.464
  cinA Streptococcus pneumoniae Rx1

46.172

100

0.464
  cinA Streptococcus pneumoniae R6

46.172

100

0.464
  cinA Streptococcus pneumoniae D39

45.933

100

0.462
  cinA Streptococcus mutans UA159

46.005

99.279

0.457
  cinA Streptococcus suis isolate S10

40.409

93.99

0.38

Multiple sequence alignment