Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FORC18_RS15590 Genome accession   NZ_CP013826
Coordinates   3223786..3224898 (-) Length   370 a.a.
NCBI ID   WP_053047804.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FORC_018     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3218786..3229898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC18_RS15560 (FORC18_2863) hemF 3219247..3220164 (-) 918 WP_053047802.1 oxygen-dependent coproporphyrinogen oxidase -
  FORC18_RS15565 (FORC18_2864) - 3220212..3220769 (-) 558 WP_005461456.1 L-threonylcarbamoyladenylate synthase -
  FORC18_RS15570 (FORC18_2865) purE 3220969..3221454 (+) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  FORC18_RS15575 (FORC18_2866) - 3221459..3222592 (+) 1134 WP_053047803.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  FORC18_RS15580 (FORC18_2867) - 3222656..3223225 (-) 570 WP_025499983.1 type I DNA topoisomerase -
  FORC18_RS15585 (FORC18_2868) - 3223304..3223783 (-) 480 WP_005461440.1 DUF494 family protein -
  FORC18_RS15590 (FORC18_2869) dprA 3223786..3224898 (-) 1113 WP_053047804.1 DNA-processing protein DprA Machinery gene
  FORC18_RS15595 (FORC18_2870) - 3224882..3225976 (-) 1095 WP_005497418.1 LysM peptidoglycan-binding domain-containing protein -
  FORC18_RS15600 (FORC18_2871) def 3226115..3226633 (+) 519 WP_005461416.1 peptide deformylase -
  FORC18_RS15605 (FORC18_2872) fmt 3226667..3227614 (+) 948 WP_053047805.1 methionyl-tRNA formyltransferase -
  FORC18_RS15610 (FORC18_2873) rsmB 3227695..3228978 (+) 1284 WP_015297514.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39913.58 Da        Isoelectric Point: 6.4129

>NTDB_id=164916 FORC18_RS15590 WP_053047804.1 3223786..3224898(-) (dprA) [Vibrio parahaemolyticus strain FORC_018]
MKPRNNDSDLAAWLKLSCLPGIGGVKMNKLLAKDAPRNIINSSSDQLYQLGLTNKQLQAWASADKEVDACLMWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHIYPARHRSLAQRVTENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSVNQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=164916 FORC18_RS15590 WP_053047804.1 3223786..3224898(-) (dprA) [Vibrio parahaemolyticus strain FORC_018]
ATGAAACCACGCAATAACGACAGTGACCTTGCTGCCTGGCTTAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTCGCCAAAGATGCGCCTCGCAATATCATCAATTCCTCTTCTGATCAGCTCTATCAATTGGGTTTGACGA
ACAAACAGTTGCAAGCTTGGGCTTCGGCCGATAAAGAGGTCGATGCTTGTTTAATGTGGCTAGCCACTTCTACAAATCAT
CACATCCTGACGCTGGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTCGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATAGCCATGGTGGGCAGCCGTAACGCCAGTTTTGATGGTTTACACCATG
CTCGTCAATTTGCGGCAGAGTTGGCTCAGCAAGAATTGATTGTCACTAGCGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGCGGGAGGTAAGACGATAGCTGTGCTGGGGTCTGGTTTAGAACATATTTATCCTGCTCGTCA
TCGTAGTTTAGCGCAGCGAGTAACAGAGAATGGAGCACTGGTTTCTGAGTTTCGTCCCAATGCCAAGCCTCGAGCAGAAA
ACTTTCCGCGTCGAAACCGTATCATTAGCGGCTTATCGTTAGGTGTGTTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCTAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAAAGTATCGATTTATTTTCTACGTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTCGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)

DprA winged helix domain (DprA_WH)

(318-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

83.784

100

0.838
  dprA Vibrio cholerae strain A1552

58.649

100

0.586
  dprA Glaesserella parasuis strain SC1401

46.917

100

0.473
  dprA Legionella pneumophila strain ERS1305867

47.853

88.108

0.422
  dprA Haemophilus influenzae Rd KW20

45.994

91.081

0.419
  dprA Neisseria meningitidis strain C311

37.949

100

0.4
  dprA Neisseria meningitidis MC58

37.949

100

0.4
  dprA Neisseria gonorrhoeae MS11

36.082

100

0.378
  dprA Neisseria gonorrhoeae strain FA1090

35.825

100

0.376

Multiple sequence alignment