Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | FORC18_RS02980 | Genome accession | NZ_CP013826 |
| Coordinates | 590578..590982 (-) | Length | 134 a.a. |
| NCBI ID | WP_015297250.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain FORC_018 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 585578..595982
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FORC18_RS02960 (FORC18_0486) | coaE | 586097..586711 (-) | 615 | WP_025633754.1 | dephospho-CoA kinase | - |
| FORC18_RS02965 (FORC18_0487) | pilD | 586712..587581 (-) | 870 | WP_005493974.1 | prepilin peptidase | Machinery gene |
| FORC18_RS02970 (FORC18_0488) | pilC | 587646..588869 (-) | 1224 | WP_005479682.1 | type II secretion system F family protein | Machinery gene |
| FORC18_RS02975 (FORC18_0489) | pilB | 588893..590578 (-) | 1686 | WP_020835398.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| FORC18_RS02980 (FORC18_0490) | pilA | 590578..590982 (-) | 405 | WP_015297250.1 | pilin | Machinery gene |
| FORC18_RS02985 (FORC18_0491) | nadC | 591246..592133 (-) | 888 | WP_025442237.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| FORC18_RS02990 (FORC18_0492) | ampD | 592226..592777 (+) | 552 | WP_005484832.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| FORC18_RS02995 (FORC18_0493) | pdhR | 593183..593950 (+) | 768 | WP_005462576.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 134 a.a. Molecular weight: 13659.55 Da Isoelectric Point: 6.4433
>NTDB_id=164899 FORC18_RS02980 WP_015297250.1 590578..590982(-) (pilA) [Vibrio parahaemolyticus strain FORC_018]
MKHSKQKKQQGFTLIELMIVVAIIGVLSAIAVPAYQNYVAKSEAATALGSLRALVTPAELKLQQDGELSGVVADLGGSAS
HALGAITTSGANISAATLTFTFNTGSLSGDAITLTKTSSGWTCTDGTTVLDNCN
MKHSKQKKQQGFTLIELMIVVAIIGVLSAIAVPAYQNYVAKSEAATALGSLRALVTPAELKLQQDGELSGVVADLGGSAS
HALGAITTSGANISAATLTFTFNTGSLSGDAITLTKTSSGWTCTDGTTVLDNCN
Nucleotide
Download Length: 405 bp
>NTDB_id=164899 FORC18_RS02980 WP_015297250.1 590578..590982(-) (pilA) [Vibrio parahaemolyticus strain FORC_018]
ATGAAACACAGTAAACAGAAAAAACAACAGGGTTTTACCTTGATTGAATTGATGATTGTGGTGGCGATTATTGGGGTGTT
GTCAGCAATTGCAGTACCTGCTTATCAAAATTATGTCGCTAAAAGTGAAGCGGCAACGGCATTAGGAAGTTTGAGAGCAT
TAGTCACTCCTGCTGAACTTAAACTTCAACAAGATGGAGAGCTATCTGGTGTAGTAGCTGACTTAGGTGGATCTGCATCA
CATGCATTAGGTGCTATTACAACATCTGGTGCTAACATAAGCGCTGCTACTCTAACCTTCACGTTTAATACAGGCTCATT
AAGTGGTGATGCTATCACACTAACCAAAACAAGTTCTGGTTGGACATGTACTGATGGCACTACGGTTTTAGACAACTGTA
ACTAA
ATGAAACACAGTAAACAGAAAAAACAACAGGGTTTTACCTTGATTGAATTGATGATTGTGGTGGCGATTATTGGGGTGTT
GTCAGCAATTGCAGTACCTGCTTATCAAAATTATGTCGCTAAAAGTGAAGCGGCAACGGCATTAGGAAGTTTGAGAGCAT
TAGTCACTCCTGCTGAACTTAAACTTCAACAAGATGGAGAGCTATCTGGTGTAGTAGCTGACTTAGGTGGATCTGCATCA
CATGCATTAGGTGCTATTACAACATCTGGTGCTAACATAAGCGCTGCTACTCTAACCTTCACGTTTAATACAGGCTCATT
AAGTGGTGATGCTATCACACTAACCAAAACAAGTTCTGGTTGGACATGTACTGATGGCACTACGGTTTTAGACAACTGTA
ACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
52.143 |
100 |
0.545 |
| pilA | Pseudomonas aeruginosa PAK |
42.446 |
100 |
0.44 |
| pilA | Vibrio cholerae strain A1552 |
42.029 |
100 |
0.433 |
| pilA | Vibrio cholerae C6706 |
42.029 |
100 |
0.433 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
42.029 |
100 |
0.433 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
42.188 |
95.522 |
0.403 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
39.535 |
96.269 |
0.381 |