Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   AVJ22_RS06675 Genome accession   NZ_CP013714
Coordinates   1389448..1389765 (-) Length   105 a.a.
NCBI ID   WP_065339156.1    Uniprot ID   -
Organism   Staphylococcus equorum strain C2014     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1384448..1394765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVJ22_RS06640 (AVJ22_06630) gcvPA 1385004..1386356 (-) 1353 WP_021339245.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  AVJ22_RS06645 (AVJ22_06635) gcvT 1386374..1387465 (-) 1092 WP_065338111.1 glycine cleavage system aminomethyltransferase GcvT -
  AVJ22_RS06650 (AVJ22_06640) - 1387643..1388158 (-) 516 WP_065338112.1 shikimate kinase -
  AVJ22_RS06660 (AVJ22_06650) comGF 1388323..1388766 (-) 444 WP_065338113.1 competence type IV pilus minor pilin ComGF -
  AVJ22_RS06665 (AVJ22_06655) - 1388738..1389037 (-) 300 WP_065338114.1 hypothetical protein -
  AVJ22_RS14580 (AVJ22_06660) comGD 1389024..1389470 (-) 447 WP_065338115.1 competence type IV pilus minor pilin ComGD -
  AVJ22_RS06675 (AVJ22_06665) comGC 1389448..1389765 (-) 318 WP_065339156.1 competence type IV pilus major pilin ComGC Machinery gene
  AVJ22_RS06680 (AVJ22_06670) comGB 1389790..1390857 (-) 1068 WP_065338116.1 competence type IV pilus assembly protein ComGB -
  AVJ22_RS06685 (AVJ22_06675) comGA 1390829..1391803 (-) 975 WP_065338117.1 competence type IV pilus ATPase ComGA Machinery gene
  AVJ22_RS06690 (AVJ22_06680) - 1391899..1392522 (-) 624 WP_065338118.1 MBL fold metallo-hydrolase -
  AVJ22_RS06695 (AVJ22_06685) - 1392524..1392847 (-) 324 WP_065338119.1 MTH1187 family thiamine-binding protein -
  AVJ22_RS06700 (AVJ22_06690) - 1392847..1393833 (-) 987 WP_065338120.1 glucokinase -
  AVJ22_RS06705 (AVJ22_06695) - 1394418..1394618 (-) 201 WP_002512453.1 YqgQ family protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11708.79 Da        Isoelectric Point: 8.4864

>NTDB_id=164281 AVJ22_RS06675 WP_065339156.1 1389448..1389765(-) (comGC) [Staphylococcus equorum strain C2014]
MKNFKKLLNNEAFTLIEMLLVLLIISLLLILIIPNIAKQSSHIQTAGCEAQIKMIDSQIEAYSLKYNKKPISINELVSEG
YINESQKRCKTGSTISINNGEAVVN

Nucleotide


Download         Length: 318 bp        

>NTDB_id=164281 AVJ22_RS06675 WP_065339156.1 1389448..1389765(-) (comGC) [Staphylococcus equorum strain C2014]
TTGAAAAACTTTAAAAAACTATTAAATAACGAAGCATTTACGCTTATAGAAATGTTGCTTGTTTTATTAATCATAAGTTT
ATTGCTTATTTTAATCATACCTAACATTGCAAAACAATCATCACATATACAAACTGCTGGTTGTGAGGCACAAATAAAAA
TGATAGACAGCCAAATTGAAGCTTATTCATTAAAATATAATAAAAAGCCAATATCAATCAATGAACTCGTTTCAGAAGGA
TATATTAACGAAAGTCAAAAGCGATGTAAAACTGGTTCAACAATTTCAATAAATAATGGTGAAGCAGTTGTTAACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus N315

68.627

97.143

0.667
  comGC Staphylococcus aureus MW2

68.627

97.143

0.667
  comGC Bacillus subtilis subsp. subtilis str. 168

41.237

92.381

0.381
  comYC Streptococcus mutans UA159

44.828

82.857

0.371
  comYC Streptococcus mutans UA140

44.828

82.857

0.371
  comGC/cglC Streptococcus mitis NCTC 12261

43.82

84.762

0.371
  comGC/cglC Streptococcus pneumoniae R6

42.697

84.762

0.362
  comGC/cglC Streptococcus pneumoniae Rx1

42.697

84.762

0.362
  comGC/cglC Streptococcus pneumoniae TIGR4

42.697

84.762

0.362
  comGC/cglC Streptococcus pneumoniae D39

42.697

84.762

0.362

Multiple sequence alignment