Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AUO94_RS14920 Genome accession   NZ_CP013661
Coordinates   3076912..3078165 (+) Length   417 a.a.
NCBI ID   WP_058384972.1    Uniprot ID   -
Organism   Planococcus kocurii strain ATCC 43650     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3071912..3083165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUO94_RS14895 (AUO94_06380) yfmH 3072078..3073379 (+) 1302 WP_058384967.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  AUO94_RS14900 (AUO94_06385) ymfI 3073376..3074095 (+) 720 WP_058384968.1 elongation factor P 5-aminopentanone reductase -
  AUO94_RS14905 (AUO94_06390) - 3074583..3075383 (+) 801 WP_058384969.1 YmfK family protein -
  AUO94_RS14910 (AUO94_06395) - 3075392..3076258 (+) 867 WP_237150128.1 helix-turn-helix domain-containing protein -
  AUO94_RS14915 (AUO94_06400) pgsA 3076309..3076887 (+) 579 WP_058384971.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AUO94_RS14920 (AUO94_06405) cinA 3076912..3078165 (+) 1254 WP_058384972.1 competence/damage-inducible protein A Machinery gene
  AUO94_RS14925 (AUO94_06410) recA 3078340..3079410 (+) 1071 WP_058384973.1 recombinase RecA Machinery gene
  AUO94_RS14930 (AUO94_06415) rny 3079771..3081327 (+) 1557 WP_058384974.1 ribonuclease Y -
  AUO94_RS14935 (AUO94_06420) - 3081393..3082190 (+) 798 WP_058386876.1 TIGR00282 family metallophosphoesterase -
  AUO94_RS14940 (AUO94_06425) - 3082480..3082908 (+) 429 WP_058384975.1 RicAFT regulatory complex protein RicA family protein -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45354.63 Da        Isoelectric Point: 4.7518

>NTDB_id=163666 AUO94_RS14920 WP_058384972.1 3076912..3078165(+) (cinA) [Planococcus kocurii strain ATCC 43650]
MNAEIIAVGSELLLGQITNTNARFLSNHLAELGINVYYHTVVGDNAARLEDAITIAENRADLILFTGGLGPTKDDLTKES
IAKHLDTTLEMNGEALDSIVAFFERAGRPMTENNKKQALVLKDSEVLVNYNGMAPGMMYKKEDRVYILLPGPPKEMEPMF
QFEAKPKLAHLLNKADVILSHVLRFYGIGEAELEDRLHSILDKQTNPTIAPLAADGEVTLRITAKTNTTEEAWQLINGAR
DEILDVVGDYLYGYDNDSLASKAIELLTEQGKTISAAESLTAGLFQSELASVPGASAVLSGGVITYNEEMKVHQLGLSAE
LLAEYGVVSEQTALAMAEAVREKFKTDISVSLTGAAGPDAHGDQPAGTVWIGIATKQGSQSYRLQLSGMRNTNRLRAVKL
ALHYVIRILTEEDARKI

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=163666 AUO94_RS14920 WP_058384972.1 3076912..3078165(+) (cinA) [Planococcus kocurii strain ATCC 43650]
ATGAACGCAGAAATTATTGCTGTCGGTTCAGAATTGTTATTAGGTCAAATCACCAATACAAATGCTCGTTTTCTATCCAA
TCATTTAGCAGAACTCGGTATTAATGTGTATTACCACACGGTAGTCGGCGACAATGCCGCTCGTTTGGAAGATGCCATTA
CTATAGCGGAAAACCGCGCCGACCTTATTTTATTCACAGGTGGGCTTGGTCCAACTAAAGACGATTTGACAAAAGAGTCT
ATCGCTAAACACCTAGACACAACGCTCGAAATGAATGGAGAAGCTCTCGACTCAATCGTTGCTTTTTTTGAACGTGCAGG
GCGTCCAATGACCGAAAACAATAAAAAACAAGCATTGGTTTTAAAAGATAGTGAAGTTCTCGTCAATTATAATGGAATGG
CACCAGGTATGATGTACAAAAAAGAAGACCGTGTTTATATCTTATTGCCTGGTCCACCAAAAGAGATGGAGCCCATGTTC
CAATTCGAAGCAAAGCCAAAGCTCGCGCATTTATTGAACAAAGCAGATGTCATTTTATCGCATGTATTGCGTTTTTACGG
CATCGGTGAAGCTGAACTAGAAGATCGATTGCATTCTATTCTTGATAAGCAAACAAACCCAACGATCGCACCATTGGCAG
CAGATGGAGAAGTAACGCTGCGCATTACAGCTAAGACCAATACGACAGAAGAAGCTTGGCAATTGATCAATGGCGCTAGA
GATGAAATTTTAGATGTAGTGGGCGATTACCTTTATGGCTACGATAACGATTCGCTAGCTTCCAAAGCAATCGAGCTACT
AACTGAACAAGGGAAGACAATTTCAGCAGCAGAAAGTTTAACTGCTGGGCTCTTCCAGTCTGAATTGGCTTCAGTACCAG
GTGCGAGTGCAGTGCTATCCGGCGGCGTTATTACCTATAATGAAGAAATGAAAGTTCACCAGCTTGGACTGTCAGCTGAA
TTGCTTGCTGAATATGGAGTCGTTAGTGAACAAACGGCATTGGCTATGGCAGAAGCTGTACGAGAAAAATTCAAAACGGA
TATTAGCGTTTCACTGACTGGTGCAGCAGGACCAGATGCACACGGGGATCAGCCAGCAGGTACTGTATGGATAGGCATTG
CCACTAAACAAGGTTCTCAGTCATACCGTCTTCAGTTGTCCGGTATGCGCAATACCAATCGTTTGCGGGCTGTTAAATTG
GCACTCCATTATGTAATTCGTATATTAACTGAAGAAGACGCACGCAAAATTTAA

Domains

Predicted by InterProScan.

Competence-damaged protein (CinA)

(257-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

50.488

98.321

0.496
  cinA Streptococcus pneumoniae Rx1

44.893

100

0.453
  cinA Streptococcus pneumoniae R6

44.893

100

0.453
  cinA Streptococcus mitis NCTC 12261

45.107

100

0.453
  cinA Streptococcus mitis SK321

45.107

100

0.453
  cinA Streptococcus pneumoniae D39

44.656

100

0.451
  cinA Streptococcus pneumoniae TIGR4

44.869

100

0.451
  cinA Streptococcus mutans UA159

45.192

99.76

0.451
  cinA Streptococcus suis isolate S10

39.286

94.005

0.369

Multiple sequence alignment