Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ATY38_RS03610 Genome accession   NZ_CP013341
Coordinates   750809..752032 (+) Length   407 a.a.
NCBI ID   WP_062558096.1    Uniprot ID   A0A0S3AH97
Organism   Nitrosomonas ureae strain Nm10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 745809..757032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATY38_RS03590 (ATY38_03590) - 746348..747148 (+) 801 WP_082633062.1 uroporphyrinogen-III synthase -
  ATY38_RS03595 (ATY38_03595) - 747284..748459 (+) 1176 WP_062558093.1 heme biosynthesis HemY N-terminal domain-containing protein -
  ATY38_RS03600 (ATY38_03600) - 748614..749666 (-) 1053 WP_062558094.1 CDP-6-deoxy-delta-3,4-glucoseen reductase -
  ATY38_RS03605 (ATY38_03605) - 749714..750610 (+) 897 WP_062558095.1 SDR family oxidoreductase -
  ATY38_RS03610 (ATY38_03610) pilC 750809..752032 (+) 1224 WP_062558096.1 type II secretion system F family protein Machinery gene
  ATY38_RS03615 (ATY38_03615) pilD 752065..752928 (+) 864 WP_062558097.1 prepilin peptidase Machinery gene
  ATY38_RS03620 (ATY38_03620) coaE 752932..753528 (+) 597 WP_062558098.1 dephospho-CoA kinase -
  ATY38_RS03625 (ATY38_03625) zapD 753650..754405 (+) 756 WP_062558099.1 cell division protein ZapD -
  ATY38_RS03630 (ATY38_03630) - 754536..754721 (-) 186 WP_062558100.1 hypothetical protein -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44663.70 Da        Isoelectric Point: 9.2137

>NTDB_id=162153 ATY38_RS03610 WP_062558096.1 750809..752032(+) (pilC) [Nitrosomonas ureae strain Nm10]
MATVTASTEKRIKEINYSWEGKDKFGKQLKGEMRAAGTVIVTSTLRRQGIKVTKIEKMQSNGRIIEKDITLFTRQLATMM
KSGVPLLQAFDIIGKGHSNRALSKLLMDIKADVETGSNLTDAFRKYPLYFDALYCNLVGAGEAAGILDTILDRLATYKEK
IQAIKGKIKSALFYPISIIVVAFVITAIIMIFVIPAFKDLFEGFGADLPAPTLFVMTISDFFVDYWWAIFGIVGGGIYAF
FYTWKRSIPMQRIIDRVALKIPVFGEVIRKATIARWARTLSTMFAAGVPLVESLDSVAGAAGNHIYYEATKNIQLEVSTG
NSLMSSMANSTVFPNMVIQMVAIGEEAGSLDSMLGKIADFYEAEVDDAVAALSSLMEPMIMVVLGTLIGGMVIAMYLPIF
KMGMVVS

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=162153 ATY38_RS03610 WP_062558096.1 750809..752032(+) (pilC) [Nitrosomonas ureae strain Nm10]
ATGGCAACTGTAACCGCAAGCACCGAGAAAAGAATAAAAGAAATCAATTATTCGTGGGAAGGAAAAGATAAGTTTGGAAA
GCAACTAAAAGGTGAAATGCGAGCCGCAGGAACTGTAATTGTAACTTCCACATTGCGCCGACAGGGCATTAAAGTTACAA
AAATAGAAAAAATGCAGTCCAATGGTAGAATTATTGAGAAAGATATAACGCTATTTACGCGTCAGCTGGCAACCATGATG
AAATCGGGTGTACCACTGCTACAGGCATTTGATATTATAGGGAAAGGCCATAGCAATCGGGCATTGAGTAAGTTGTTGAT
GGATATTAAAGCTGATGTCGAAACGGGCAGTAATCTTACGGATGCATTCCGCAAATACCCGCTTTATTTTGATGCGCTAT
ATTGCAATCTTGTTGGCGCAGGGGAGGCAGCAGGTATTCTTGATACTATTTTAGACCGCCTAGCTACTTATAAAGAAAAA
ATCCAAGCTATCAAGGGAAAAATTAAGTCTGCTCTTTTTTACCCTATTTCAATTATTGTAGTTGCATTTGTCATCACGGC
AATAATAATGATTTTTGTGATTCCGGCCTTTAAGGATTTATTTGAGGGATTTGGTGCAGATCTACCTGCTCCAACACTCT
TTGTAATGACTATCTCAGATTTCTTCGTCGACTATTGGTGGGCAATCTTTGGTATCGTGGGTGGCGGAATTTATGCTTTC
TTTTATACTTGGAAAAGATCTATCCCCATGCAGCGGATTATCGATCGTGTCGCACTTAAGATTCCTGTCTTTGGAGAAGT
AATTCGTAAAGCTACTATTGCACGTTGGGCACGCACACTCTCTACAATGTTTGCAGCAGGCGTTCCTTTGGTAGAATCAT
TAGATTCCGTCGCGGGTGCTGCTGGAAATCATATCTACTATGAAGCCACAAAAAATATACAGCTTGAAGTTAGCACAGGT
AATAGTTTAATGTCATCAATGGCCAACAGCACCGTATTTCCCAATATGGTTATTCAAATGGTAGCTATCGGTGAAGAAGC
GGGATCGCTTGATTCCATGCTTGGTAAAATAGCTGATTTTTATGAAGCGGAAGTCGACGATGCTGTTGCCGCACTTTCTA
GCTTAATGGAGCCCATGATCATGGTTGTTCTGGGAACACTCATTGGTGGTATGGTGATCGCAATGTATTTACCTATTTTC
AAAATGGGAATGGTCGTTAGTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0S3AH97

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

54.523

97.789

0.533
  pilC Pseudomonas stutzeri DSM 10701

51.613

99.017

0.511
  pilC Acinetobacter baumannii D1279779

50.251

97.789

0.491
  pilG Neisseria gonorrhoeae MS11

50.251

97.789

0.491
  pilG Neisseria meningitidis 44/76-A

50

97.789

0.489
  pilC Acinetobacter baylyi ADP1

49.874

97.543

0.486
  pilC Vibrio cholerae strain A1552

39.44

96.56

0.381
  pilC Vibrio campbellii strain DS40M4

38.095

98.034

0.373
  pilC Thermus thermophilus HB27

37.845

98.034

0.371

Multiple sequence alignment