Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FORC22_RS16310 Genome accession   NZ_CP013248
Coordinates   3340537..3341649 (-) Length   370 a.a.
NCBI ID   WP_024703797.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FORC_022     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3335537..3346649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC22_RS16280 (FORC22_3045) hemF 3335998..3336915 (-) 918 WP_071652485.1 oxygen-dependent coproporphyrinogen oxidase -
  FORC22_RS16285 (FORC22_3046) - 3336963..3337520 (-) 558 WP_015297509.1 L-threonylcarbamoyladenylate synthase -
  FORC22_RS16290 (FORC22_3047) purE 3337720..3338205 (+) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  FORC22_RS16295 (FORC22_3048) - 3338210..3339337 (+) 1128 WP_071652486.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  FORC22_RS16300 (FORC22_3049) - 3339407..3339976 (-) 570 WP_021449061.1 type I DNA topoisomerase -
  FORC22_RS16305 (FORC22_3050) - 3340055..3340534 (-) 480 WP_005461440.1 DUF494 family protein -
  FORC22_RS16310 (FORC22_3051) dprA 3340537..3341649 (-) 1113 WP_024703797.1 DNA-processing protein DprA Machinery gene
  FORC22_RS16315 (FORC22_3052) - 3341633..3342727 (-) 1095 WP_005461388.1 LysM peptidoglycan-binding domain-containing protein -
  FORC22_RS16320 (FORC22_3053) def 3342866..3343384 (+) 519 WP_005461416.1 peptide deformylase -
  FORC22_RS16325 (FORC22_3054) fmt 3343418..3344365 (+) 948 WP_005461453.1 methionyl-tRNA formyltransferase -
  FORC22_RS16330 (FORC22_3055) rsmB 3344446..3345729 (+) 1284 WP_025503762.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39943.61 Da        Isoelectric Point: 6.4129

>NTDB_id=161203 FORC22_RS16310 WP_024703797.1 3340537..3341649(-) (dprA) [Vibrio parahaemolyticus strain FORC_022]
MKPRNNDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPRNIINSSSDQLYQLGLTNKQLQAWASADKEVDACLMWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHIYPARHRSLAQRVTENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSVNQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=161203 FORC22_RS16310 WP_024703797.1 3340537..3341649(-) (dprA) [Vibrio parahaemolyticus strain FORC_022]
ATGAAACCACGCAATAACGACAGTGACCTTGCTGCCTGGCTTAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTCGCAATATCATCAATTCCTCTTCTGATCAGCTCTATCAATTGGGTTTGACGA
ACAAACAGTTGCAAGCTTGGGCTTCGGCCGATAAAGAGGTCGATGCTTGTTTAATGTGGCTAGCCACTTCTACAAATCAT
CACATTCTGACGCTAGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTCGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATAGCCATGGTGGGCAGCCGTAACGCCAGTTTTGATGGTTTACACCATG
CACGTCAATTTGCGGCAGAGTTGGCTCAGCAAGAATTGATTGTCACTAGCGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGCGGGTGGTAAGACGATAGCTGTGCTCGGGTCTGGTTTAGAACATATTTATCCTGCTCGTCA
TCGTAGTTTAGCGCAGCGAGTAACAGAGAATGGAGCACTGGTTTCTGAGTTTCGTCCCAATGCCAAGCCTCGCGCAGAAA
ACTTTCCGCGTCGAAACCGTATCATTAGCGGCTTATCGTTAGGTGTGTTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCTAG
TGGTGGTAACCAATTGATTCGCAATGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAAAGTATCGATTTATTTTCTACGCTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)

DprA winged helix domain (DprA_WH)

(318-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

84.054

100

0.841
  dprA Vibrio cholerae strain A1552

58.649

100

0.586
  dprA Glaesserella parasuis strain SC1401

46.917

100

0.473
  dprA Legionella pneumophila strain ERS1305867

47.853

88.108

0.422
  dprA Haemophilus influenzae Rd KW20

46.291

91.081

0.422
  dprA Neisseria meningitidis strain C311

37.949

100

0.4
  dprA Neisseria meningitidis MC58

37.949

100

0.4
  dprA Neisseria gonorrhoeae MS11

36.082

100

0.378
  dprA Neisseria gonorrhoeae strain FA1090

35.825

100

0.376

Multiple sequence alignment