Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FORC22_RS13420 Genome accession   NZ_CP013248
Coordinates   2769489..2770712 (+) Length   407 a.a.
NCBI ID   WP_025523095.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FORC_022     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2764489..2775712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC22_RS13400 (FORC22_2561) ampD 2765531..2766082 (-) 552 WP_005484832.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  FORC22_RS13405 (FORC22_2562) nadC 2766175..2767062 (+) 888 WP_071652388.1 carboxylating nicotinate-nucleotide diphosphorylase -
  FORC22_RS13410 (FORC22_2563) - 2767326..2767778 (+) 453 WP_071652389.1 pilin -
  FORC22_RS13415 (FORC22_2564) pilB 2767780..2769465 (+) 1686 WP_071652390.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FORC22_RS13420 (FORC22_2565) pilC 2769489..2770712 (+) 1224 WP_025523095.1 type II secretion system F family protein Machinery gene
  FORC22_RS13425 (FORC22_2566) pilD 2770777..2771646 (+) 870 WP_071652391.1 prepilin peptidase Machinery gene
  FORC22_RS13430 (FORC22_2567) coaE 2771647..2772261 (+) 615 WP_005480887.1 dephospho-CoA kinase -
  FORC22_RS13435 (FORC22_2568) zapD 2772289..2773029 (+) 741 WP_023624252.1 cell division protein ZapD -
  FORC22_RS13440 (FORC22_2569) yacG 2773098..2773292 (+) 195 WP_005462546.1 DNA gyrase inhibitor YacG -
  FORC22_RS13445 (FORC22_2570) rplS 2773639..2773992 (-) 354 WP_005462554.1 50S ribosomal protein L19 -
  FORC22_RS13450 (FORC22_2571) trmD 2774034..2774777 (-) 744 WP_005462562.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  FORC22_RS13455 (FORC22_2572) rimM 2774805..2775353 (-) 549 WP_005462552.1 ribosome maturation factor RimM -
  FORC22_RS13460 (FORC22_2573) rpsP 2775382..2775630 (-) 249 WP_005379962.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45237.43 Da        Isoelectric Point: 10.3996

>NTDB_id=161185 FORC22_RS13420 WP_025523095.1 2769489..2770712(+) (pilC) [Vibrio parahaemolyticus strain FORC_022]
MKTTTPQLKNFRWKGVNSSGKKTSGQTLAMSEIEVRERLDAQHIKIKKLKKSSISFLTKLSHRVKGKDITVFTRQISTML
VTGVPLVQALKLVSDNHKKAEMKSILMSVTRAVEAGTPMSKAMRTASNHFDPLYTDLIATGEQSGNLAEVFERLATYREK
NEQLRAKVIKALIYPAMVILVALGVSFIMLTKVIPEFEKMFVGFGAELPWFTRQVLDLSAWTQNWSPFIALGSISLFISA
RVLSMRSDSFRLMLNRSVLKFPVLGAVLSKAAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNMHYQLAIEEVYRDTAAG
MPMYVAMRNCNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGIVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=161185 FORC22_RS13420 WP_025523095.1 2769489..2770712(+) (pilC) [Vibrio parahaemolyticus strain FORC_022]
ATGAAAACTACGACACCACAATTAAAGAACTTCCGTTGGAAAGGCGTCAACAGCTCAGGGAAAAAGACCTCTGGTCAAAC
TCTGGCAATGAGCGAAATCGAAGTACGAGAGCGCTTAGATGCCCAGCACATCAAAATCAAAAAGCTAAAGAAAAGCAGCA
TCTCTTTTTTGACCAAACTTAGCCATCGCGTAAAAGGAAAAGACATCACGGTTTTCACTCGTCAAATCTCAACGATGCTA
GTAACCGGTGTGCCGCTAGTACAAGCATTGAAATTGGTCTCTGATAACCACAAAAAAGCGGAAATGAAATCCATTTTGAT
GAGTGTAACTCGGGCTGTTGAAGCGGGTACGCCGATGTCCAAAGCGATGCGTACCGCCAGCAACCATTTTGACCCGCTAT
ATACCGACCTGATTGCGACAGGAGAACAATCGGGCAACTTAGCCGAAGTGTTCGAACGCTTAGCTACCTACAGGGAAAAA
AATGAGCAGCTTAGAGCCAAAGTGATCAAGGCTCTAATATATCCAGCCATGGTTATTCTAGTTGCACTGGGAGTATCGTT
TATCATGCTAACCAAGGTCATTCCCGAGTTTGAAAAAATGTTTGTTGGCTTTGGCGCTGAATTGCCATGGTTTACAAGGC
AAGTCTTAGATCTTTCCGCTTGGACACAAAACTGGAGCCCATTTATCGCACTTGGCTCCATCAGTTTATTTATCTCCGCG
AGAGTACTCTCTATGCGTTCTGACTCTTTTCGCTTAATGCTCAACCGCTCTGTGCTTAAGTTTCCAGTCCTTGGGGCAGT
TTTATCGAAAGCCGCTATCGCAAAATTTAGTCGAACCCTCGCTACGAGCTTTACGGCGGGCATTCCGATTCTAACCAGTT
TAAAAACCACATCGAAAACGTCCGGAAATATGCATTATCAATTGGCTATCGAAGAGGTTTATCGAGATACCGCAGCAGGA
ATGCCGATGTATGTTGCAATGCGCAATTGCAACGTGTTCCCTGAGTTGGTGCTGCAAATGGTTATGATCGGCGAAGAATC
CGGCCGACTTGACGACATGCTCAATAAAGTCGCCACAATTTACGAGTTTGAAGTGGACAACACCGTCGATAACCTCAGTA
AAATCTTAGAGCCATTGATTATCGTTTTTTTAGGTATCGTTGTCGGTGGCTTGGTCACAGCAATGTACTTGCCAATCTTT
AACTTAATGAGTGTATTGGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

86.241

100

0.862
  pilC Vibrio cholerae strain A1552

74.074

99.509

0.737
  pilC Acinetobacter baylyi ADP1

42.75

98.28

0.42
  pilC Acinetobacter baumannii D1279779

41.191

99.017

0.408
  pilC Legionella pneumophila strain ERS1305867

40.342

100

0.405
  pilG Neisseria gonorrhoeae MS11

40.494

99.509

0.403
  pilC Pseudomonas stutzeri DSM 10701

40.909

97.297

0.398
  pilG Neisseria meningitidis 44/76-A

39.901

99.754

0.398

Multiple sequence alignment