Detailed information NTG0161186

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FORC22_RS13425
• Genome accession: NZ_CP013248
• Coordinates: 2770777..2771646 (+)
• Length: 289 a.a.
• NCBI ID: WP_071652391.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain FORC_022
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2765777..2776646

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FORC22_RS13405 (FORC22_2562)	nadC	2766175..2767062 (+)	888	WP_071652388.1	carboxylating nicotinate-nucleotide diphosphorylase	-
FORC22_RS13410 (FORC22_2563)	-	2767326..2767778 (+)	453	WP_071652389.1	pilin	-
FORC22_RS13415 (FORC22_2564)	pilB	2767780..2769465 (+)	1686	WP_071652390.1	type IV-A pilus assembly ATPase PilB	Machinery gene
FORC22_RS13420 (FORC22_2565)	pilC	2769489..2770712 (+)	1224	WP_025523095.1	type II secretion system F family protein	Machinery gene
FORC22_RS13425 (FORC22_2566)	pilD	2770777..2771646 (+)	870	WP_071652391.1	prepilin peptidase	Machinery gene
FORC22_RS13430 (FORC22_2567)	coaE	2771647..2772261 (+)	615	WP_005480887.1	dephospho-CoA kinase	-
FORC22_RS13435 (FORC22_2568)	zapD	2772289..2773029 (+)	741	WP_023624252.1	cell division protein ZapD	-
FORC22_RS13440 (FORC22_2569)	yacG	2773098..2773292 (+)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
FORC22_RS13445 (FORC22_2570)	rplS	2773639..2773992 (-)	354	WP_005462554.1	50S ribosomal protein L19	-
FORC22_RS13450 (FORC22_2571)	trmD	2774034..2774777 (-)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
FORC22_RS13455 (FORC22_2572)	rimM	2774805..2775353 (-)	549	WP_005462552.1	ribosome maturation factor RimM	-
FORC22_RS13460 (FORC22_2573)	rpsP	2775382..2775630 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32359.50 Da
• Isoelectric Point: 7.1970

>NTDB_id=161186 FORC22_RS13425 WP_071652391.1 2770777..2771646(+) (pilD) [Vibrio parahaemolyticus strain FORC_022]
MEVLQYYLWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=161186 FORC22_RS13425 WP_071652391.1 2770777..2771646(+) (pilD) [Vibrio parahaemolyticus strain FORC_022]
ATGGAAGTGTTGCAGTACTACCTTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCCGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAAAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.927	100	0.889
pilD	Vibrio cholerae strain A1552	72.917	99.654	0.727
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	46.739	95.502	0.446