Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   BBH51_RS03645 Genome accession   NZ_CP016553
Coordinates   733196..735277 (+) Length   693 a.a.
NCBI ID   WP_005538627.1    Uniprot ID   A0A5D0EH16
Organism   Aggregatibacter actinomycetemcomitans strain IDH781     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 728196..740277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBH51_RS03625 (BBH51_03625) gap 728807..729811 (-) 1005 WP_005554775.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  BBH51_RS03630 (BBH51_03630) gmk 730054..730692 (+) 639 WP_033001820.1 guanylate kinase -
  BBH51_RS03635 (BBH51_03635) rpoZ 730759..731025 (+) 267 WP_005538631.1 DNA-directed RNA polymerase subunit omega -
  BBH51_RS03640 (BBH51_03640) spoT 731071..733194 (+) 2124 WP_005538628.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  BBH51_RS03645 (BBH51_03645) recG 733196..735277 (+) 2082 WP_005538627.1 ATP-dependent DNA helicase RecG Machinery gene
  BBH51_RS03650 (BBH51_03650) - 735270..735764 (+) 495 WP_005538626.1 chorismate--pyruvate lyase family protein -
  BBH51_RS03655 (BBH51_03655) murI 735798..736625 (+) 828 WP_005565146.1 glutamate racemase -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 77572.12 Da        Isoelectric Point: 8.4271

>NTDB_id=160682 BBH51_RS03645 WP_005538627.1 733196..735277(+) (recG) [Aggregatibacter actinomycetemcomitans strain IDH781]
MSTQLLDAIPLTVISGVGAAVVEKLGKLGIFNLQDLLFHLPLRYEDRTRITPIADLQAEQYATIEGVVQSSEVQFGRRPM
LMVYLSDGTAKLALRFFNFNAGMKNSLQPGARVKAFGEVRRGRFMAEIHHPEYQIIHDNKPLVLAETLTPIYPSTEGLKQ
TTLRKLIGQALLVLDKTPIAELLPAECNPHPFDLKSAIQFLHNPPPDVSLTTLEEGKHPAQQRLIFEELLAYNLAMQKVR
SGIQANFAEPLSYQSDLKARFLAQLPFQPTNAQLRVTEDIERDMAQSYPMMRLVQGDVGSGKTLVAALAALIAIDNGKQV
ALMAPTEILAEQHAVNFRRWFEPIGIQVGWLAGKVKGKQRVAELEKIKSGAVQMVVGTHALFQEDVEFHRLSLVIVDEQH
RFGVHQRLMLREKGNQAGVYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTIAISEDRRAEIIERVNVACT
QEKRQAYWVCTLIDESEVLEAQAAEAVAEDLRKILPHLRIGLVHGRMKPNEKQAVMAQFKLVELDLLVATTVIEVGVDVP
NASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMYKPPLGKISQKRLQVMRDTQDGFVISEKDLEIRGPGEVLGTKQ
TGITEFKVANLMRDRKMLPTVQFYAKQLVQKYPQTADLLIRRWLNNREIYSNA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=160682 BBH51_RS03645 WP_005538627.1 733196..735277(+) (recG) [Aggregatibacter actinomycetemcomitans strain IDH781]
ATGAGCACCCAATTATTAGATGCGATTCCGTTAACGGTAATTTCCGGTGTCGGTGCGGCTGTGGTGGAAAAGTTAGGTAA
ATTGGGGATTTTCAATCTGCAAGATCTGTTATTTCACCTTCCCCTTCGTTATGAAGATCGCACCCGCATCACACCCATCG
CCGATCTGCAGGCTGAACAGTACGCCACCATTGAAGGCGTCGTGCAAAGTAGCGAAGTTCAATTCGGGCGTCGCCCGATG
TTGATGGTCTATCTTTCCGACGGTACCGCCAAATTGGCGTTGCGCTTTTTTAATTTTAACGCCGGTATGAAAAATAGCTT
GCAGCCAGGTGCTCGGGTGAAAGCGTTTGGTGAAGTGCGCCGCGGGCGTTTCATGGCGGAAATTCATCATCCCGAATATC
AGATTATTCATGACAATAAACCGCTGGTTCTGGCGGAAACCCTCACGCCCATTTATCCCTCTACGGAAGGGCTAAAACAA
ACCACTTTGCGAAAATTAATTGGGCAAGCCTTGCTGGTATTGGATAAAACGCCCATAGCCGAATTGTTACCGGCGGAATG
TAATCCGCACCCTTTTGATTTGAAATCCGCCATTCAGTTCTTACATAACCCGCCGCCCGACGTGTCATTAACGACCTTGG
AGGAAGGCAAACATCCCGCCCAACAGCGACTGATTTTTGAAGAATTACTGGCATATAACCTGGCGATGCAAAAAGTGCGG
TCAGGAATTCAAGCGAATTTTGCCGAGCCTTTGTCGTATCAATCGGATTTAAAAGCACGTTTTTTAGCGCAGTTGCCGTT
TCAGCCGACAAATGCACAGTTGCGAGTGACGGAAGATATTGAACGGGATATGGCGCAATCTTACCCGATGATGCGTTTGG
TGCAAGGGGATGTCGGTTCAGGTAAAACGTTAGTGGCGGCGTTAGCGGCGTTGATTGCCATTGATAACGGTAAACAGGTG
GCATTGATGGCACCGACGGAAATCCTGGCGGAACAACATGCTGTAAATTTCCGTCGATGGTTTGAACCTATCGGCATTCA
AGTAGGCTGGCTAGCCGGGAAAGTCAAAGGCAAACAACGAGTTGCCGAACTGGAAAAAATAAAAAGCGGCGCAGTACAAA
TGGTCGTCGGCACGCACGCGCTATTTCAAGAAGACGTGGAATTTCATCGTTTGAGCTTAGTGATTGTTGATGAACAGCAT
CGCTTCGGCGTGCACCAACGGCTTATGTTGCGGGAAAAAGGCAATCAGGCGGGCGTGTATCCTCATCAGTTAATCATGAC
CGCCACACCGATTCCACGTACGCTTGCCATGACCGTATATGCGGATTTGGATACTTCTATTATCGACGAATTGCCACCAG
GGCGTACGCCGATTACCACCATTGCCATTTCCGAAGATCGTCGTGCAGAGATTATCGAGCGGGTGAATGTGGCGTGTACG
CAGGAAAAACGCCAGGCTTACTGGGTTTGTACTCTGATTGATGAATCGGAAGTCTTGGAAGCGCAGGCGGCGGAAGCGGT
GGCGGAAGATCTCCGTAAAATTCTACCGCACTTACGCATCGGCTTGGTGCACGGGCGAATGAAACCGAATGAAAAACAAG
CGGTGATGGCGCAGTTTAAACTTGTCGAATTGGATTTACTGGTCGCTACGACCGTGATTGAAGTGGGCGTGGATGTGCCG
AATGCCAGTTTGATGATTATCGAAAACGCCGAGCGCCTTGGCTTGTCCCAGCTCCATCAGTTACGCGGGCGGGTTGGGCG
TGGCAGTACCGCCTCTTTTTGTGTGTTAATGTATAAACCGCCGCTTGGCAAGATTTCGCAAAAACGCTTACAAGTCATGC
GCGACACGCAGGATGGTTTCGTGATTTCGGAAAAAGATCTGGAAATTCGTGGTCCGGGGGAAGTGCTTGGCACGAAACAA
ACAGGAATTACCGAATTTAAAGTGGCGAACCTCATGCGCGATCGCAAAATGCTGCCGACAGTGCAGTTTTATGCAAAACA
ACTAGTACAGAAATATCCGCAAACGGCGGACTTGTTGATTCGCCGCTGGCTAAATAATCGTGAGATTTATAGCAATGCCT
GA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(616-675)

DEAD/DEAH box helicase (DEAD)

(293-431)

RecG wedge domain (RecG_wedge)

(14-170)

Helicase conserved C-terminal domain (Helicase_C)

(478-588)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5D0EH16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.478

96.825

0.479
  recG Bacillus subtilis subsp. subtilis str. 168

40.976

97.547

0.4
  recG/mmsA Streptococcus pneumoniae R6

39.85

95.96

0.382
  recG/mmsA Streptococcus pneumoniae R36A

39.85

95.96

0.382

Multiple sequence alignment