Detailed information
Bioinformatically predicted
Overview
| Name | comE1/comEA | Type | Machinery gene |
| Locus tag | DW68_RS10620 | Genome accession | NZ_CP013124 |
| Coordinates | 2288078..2288401 (+) | Length | 107 a.a. |
| NCBI ID | WP_013715876.1 | Uniprot ID | A0A379IU73 |
| Organism | Ectopseudomonas mendocina S5.2 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2283078..2293401
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DW68_RS10585 (DW68_010590) | - | 2283203..2283490 (-) | 288 | WP_003116607.1 | HigA family addiction module antitoxin | - |
| DW68_RS25710 (DW68_010595) | - | 2283508..2283785 (-) | 278 | Protein_2092 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| DW68_RS10605 (DW68_010610) | - | 2285145..2286344 (-) | 1200 | WP_017364056.1 | MFS transporter | - |
| DW68_RS10615 (DW68_010620) | - | 2286951..2287805 (+) | 855 | WP_017364055.1 | helix-turn-helix transcriptional regulator | - |
| DW68_RS10620 (DW68_010625) | comE1/comEA | 2288078..2288401 (+) | 324 | WP_013715876.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| DW68_RS10625 (DW68_010630) | recC | 2288565..2291978 (+) | 3414 | WP_017364054.1 | exodeoxyribonuclease V subunit gamma | - |
Sequence
Protein
Download Length: 107 a.a. Molecular weight: 11212.75 Da Isoelectric Point: 4.5680
>NTDB_id=160078 DW68_RS10620 WP_013715876.1 2288078..2288401(+) (comE1/comEA) [Ectopseudomonas mendocina S5.2]
MMKIYLSSVLFAVLTSLSLAASAVETSKTEPAATASAQVSQAVTVNLNTADAETLQRELAGIGATKAQAIVAYREAHGNF
ASVDELLEVKGIGEATLDKNRDKLMVD
MMKIYLSSVLFAVLTSLSLAASAVETSKTEPAATASAQVSQAVTVNLNTADAETLQRELAGIGATKAQAIVAYREAHGNF
ASVDELLEVKGIGEATLDKNRDKLMVD
Nucleotide
Download Length: 324 bp
>NTDB_id=160078 DW68_RS10620 WP_013715876.1 2288078..2288401(+) (comE1/comEA) [Ectopseudomonas mendocina S5.2]
ATGATGAAAATCTACCTCTCCTCTGTGTTGTTCGCCGTTCTCACCTCCCTCTCCCTTGCTGCCTCGGCGGTAGAAACTTC
GAAGACCGAACCAGCCGCTACGGCTTCTGCGCAGGTTTCTCAGGCGGTCACCGTCAATCTGAATACCGCTGATGCCGAGA
CTCTCCAGCGCGAGTTGGCGGGTATCGGGGCGACCAAGGCGCAGGCGATCGTGGCCTATCGCGAGGCTCACGGAAACTTC
GCTTCGGTTGACGAGTTACTTGAGGTCAAAGGTATCGGGGAGGCGACTCTGGACAAGAATCGCGACAAGCTCATGGTCGA
TTGA
ATGATGAAAATCTACCTCTCCTCTGTGTTGTTCGCCGTTCTCACCTCCCTCTCCCTTGCTGCCTCGGCGGTAGAAACTTC
GAAGACCGAACCAGCCGCTACGGCTTCTGCGCAGGTTTCTCAGGCGGTCACCGTCAATCTGAATACCGCTGATGCCGAGA
CTCTCCAGCGCGAGTTGGCGGGTATCGGGGCGACCAAGGCGCAGGCGATCGTGGCCTATCGCGAGGCTCACGGAAACTTC
GCTTCGGTTGACGAGTTACTTGAGGTCAAAGGTATCGGGGAGGCGACTCTGGACAAGAATCGCGACAAGCTCATGGTCGA
TTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE1/comEA | Haemophilus influenzae Rd KW20 |
46.847 |
100 |
0.486 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
46.296 |
100 |
0.467 |
| comEA | Vibrio cholerae C6706 |
50 |
89.72 |
0.449 |
| comEA | Vibrio cholerae strain A1552 |
50 |
89.72 |
0.449 |
| comEA | Legionella pneumophila str. Paris |
43.434 |
92.523 |
0.402 |
| comEA | Legionella pneumophila strain ERS1305867 |
43.434 |
92.523 |
0.402 |
| comEA | Streptococcus thermophilus LMD-9 |
51.852 |
75.701 |
0.393 |
| comEA | Acinetobacter baylyi ADP1 |
46.591 |
82.243 |
0.383 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
40.196 |
95.327 |
0.383 |