Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FORC23_RS00340 Genome accession   NZ_CP012950
Coordinates   71074..72186 (+) Length   370 a.a.
NCBI ID   WP_070225436.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FORC_023 isolate 378     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 66074..77186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC23_RS00320 (FORC23_0063) rsmB 66994..68277 (-) 1284 WP_070225435.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  FORC23_RS00325 (FORC23_0064) fmt 68358..69305 (-) 948 WP_005461453.1 methionyl-tRNA formyltransferase -
  FORC23_RS00330 (FORC23_0065) def 69339..69857 (-) 519 WP_005461416.1 peptide deformylase -
  FORC23_RS00335 (FORC23_0066) - 69996..71090 (+) 1095 WP_005461388.1 LysM peptidoglycan-binding domain-containing protein -
  FORC23_RS00340 (FORC23_0067) dprA 71074..72186 (+) 1113 WP_070225436.1 DNA-processing protein DprA Machinery gene
  FORC23_RS00345 (FORC23_0068) - 72189..72668 (+) 480 WP_005461440.1 DUF494 family protein -
  FORC23_RS00350 (FORC23_0069) - 72747..73316 (+) 570 WP_021449061.1 type I DNA topoisomerase -
  FORC23_RS00355 (FORC23_0070) - 73386..74513 (-) 1128 WP_029802047.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  FORC23_RS00360 (FORC23_0071) purE 74518..75003 (-) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  FORC23_RS00365 (FORC23_0072) - 75203..75760 (+) 558 WP_005461456.1 L-threonylcarbamoyladenylate synthase -
  FORC23_RS00370 (FORC23_0073) hemF 75808..76725 (+) 918 WP_070225437.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39921.59 Da        Isoelectric Point: 6.8301

>NTDB_id=158456 FORC23_RS00340 WP_070225436.1 71074..72186(+) (dprA) [Vibrio parahaemolyticus strain FORC_023 isolate 378]
MKPRNNDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPRNIINSSSEQLYQLGLTHKQLQAWASADKEVDACLTWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHIYPARHRSLAQRVTKNGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSANQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=158456 FORC23_RS00340 WP_070225436.1 71074..72186(+) (dprA) [Vibrio parahaemolyticus strain FORC_023 isolate 378]
ATGAAACCACGCAATAATGACAGTGACCTTGCTGCCTGGCTTAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTCGCAATATCATCAATTCCTCTTCTGAACAGCTCTATCAATTGGGTTTGACGC
ACAAACAGTTGCAAGCTTGGGCTTCGGCCGATAAAGAGGTCGATGCTTGTTTAACGTGGCTAGCCACTTCTACAAATCAT
CACATTCTGACGCTGGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTTGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATTGCCATGGTGGGCAGCCGTAACGCCAGTTTTGATGGTTTACACCATG
CACGTCAATTTGCGGCAGAGTTGGCTCAGCAAGAATTGATTGTCACTAGCGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGCGGGTGGTAAGACGATAGCTGTGCTCGGGTCTGGTTTAGAACATATTTATCCTGCTCGTCA
TCGTAGTTTAGCGCAGCGAGTAACAAAAAATGGCGCACTGGTTTCTGAGTTTCGTCCCAATGCCAAGCCTCGAGCAGAAA
ACTTTCCGCGTCGAAACCGTATCATTAGCGGCTTATCGTTAGGTGTGTTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCTAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGCTAATCAAAGTATCGATTTATTTTCTACGTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTCGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(318-363)

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

84.324

100

0.843
  dprA Vibrio cholerae strain A1552

58.649

100

0.586
  dprA Glaesserella parasuis strain SC1401

46.649

100

0.47
  dprA Haemophilus influenzae Rd KW20

46.154

91.351

0.422
  dprA Legionella pneumophila strain ERS1305867

47.546

88.108

0.419
  dprA Neisseria meningitidis strain C311

38.619

100

0.408
  dprA Neisseria meningitidis MC58

38.619

100

0.408
  dprA Neisseria gonorrhoeae MS11

36.247

100

0.381
  dprA Neisseria gonorrhoeae strain FA1090

35.99

100

0.378

Multiple sequence alignment