Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   SanJ4211_RS04675 Genome accession   NZ_CP012805
Coordinates   934003..934692 (-) Length   229 a.a.
NCBI ID   WP_003024592.1    Uniprot ID   A0A0P0N8H2
Organism   Streptococcus anginosus strain J4211     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 929003..939692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SanJ4211_RS04655 (SanJ4211_0915c) - 929174..929782 (-) 609 WP_003024603.1 NADPH-dependent FMN reductase -
  SanJ4211_RS04660 (SanJ4211_0916c) - 929802..930731 (-) 930 WP_021001667.1 FAD:protein FMN transferase -
  SanJ4211_RS04665 (SanJ4211_0917) nox 931022..932395 (+) 1374 WP_021001668.1 H2O-forming NADH oxidase -
  SanJ4211_RS04670 (SanJ4211_0918c) scnK 932692..934002 (-) 1311 WP_021001669.1 sensor histidine kinase Regulator
  SanJ4211_RS04675 (SanJ4211_0919c) scnR 934003..934692 (-) 690 WP_003024592.1 response regulator transcription factor Regulator
  SanJ4211_RS04680 (SanJ4211_0920) - 934864..935772 (+) 909 WP_021001670.1 ABC transporter ATP-binding protein -
  SanJ4211_RS04685 (SanJ4211_0921) - 935772..936512 (+) 741 WP_003024586.1 ABC transporter permease -
  SanJ4211_RS04690 (SanJ4211_0922) - 936509..937237 (+) 729 WP_003024584.1 ABC transporter permease -
  SanJ4211_RS04695 (SanJ4211_0923) - 937465..939021 (+) 1557 WP_021001671.1 ClC family H(+)/Cl(-) exchange transporter -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26267.57 Da        Isoelectric Point: 6.5039

>NTDB_id=157708 SanJ4211_RS04675 WP_003024592.1 934003..934692(-) (scnR) [Streptococcus anginosus strain J4211]
MNYKEKKILILDDNPEILEMVQESLNIAGFSNLTSVQSQKEALEQFEEKSFDLVILDIMLPEGSGFEVLKGIRKTSTVPV
LFLSAISDIEKQYQGFELGADDYIIKPFRPRDLELRILSILKRAYPEKEDTLVLPACQVHFSQALITKGKLEIQLTAKEY
SILKVLYDNKNRIVTFDQLLEKVWGLQYQGYDNTLMAHIRKIRQKIEANPSKPESLITVKGLGYKLKVN

Nucleotide


Download         Length: 690 bp        

>NTDB_id=157708 SanJ4211_RS04675 WP_003024592.1 934003..934692(-) (scnR) [Streptococcus anginosus strain J4211]
ATGAATTATAAAGAAAAGAAGATCTTAATTTTAGACGATAACCCAGAAATTTTAGAAATGGTGCAAGAATCATTGAACAT
TGCTGGTTTTAGCAATCTAACAAGTGTACAATCACAAAAAGAAGCTTTGGAGCAATTTGAAGAAAAATCTTTTGATTTAG
TTATTTTAGACATTATGCTGCCTGAAGGATCAGGATTTGAAGTTTTAAAAGGTATCCGTAAGACTTCAACGGTTCCTGTT
TTGTTTTTGTCGGCAATCTCCGATATAGAAAAACAATATCAGGGCTTTGAGCTAGGGGCAGATGACTATATTATCAAGCC
TTTCCGCCCAAGAGATTTGGAGTTGCGTATTCTTTCCATCTTAAAAAGAGCCTATCCCGAAAAGGAAGATACCCTTGTTT
TGCCTGCTTGCCAGGTGCATTTTAGCCAAGCCTTGATTACCAAAGGAAAACTAGAGATTCAGCTGACAGCTAAGGAATAC
AGTATTCTTAAGGTCTTATATGATAATAAGAATCGCATTGTTACTTTTGACCAACTCTTAGAAAAAGTCTGGGGCTTACA
ATACCAAGGCTATGATAATACCCTAATGGCTCATATTCGTAAGATTCGACAAAAGATCGAAGCCAATCCATCTAAACCAG
AAAGCTTAATAACGGTTAAAGGTTTGGGTTACAAACTAAAGGTGAATTAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-226)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0P0N8H2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

87.773

100

0.878
  micA Streptococcus pneumoniae Cp1015

38.197

100

0.389
  vicR Streptococcus mutans UA159

37.069

100

0.376

Multiple sequence alignment