Detailed information    

insolico Bioinformatically predicted

Overview


Name   scnK   Type   Regulator
Locus tag   SanJ4211_RS04670 Genome accession   NZ_CP012805
Coordinates   932692..934002 (-) Length   436 a.a.
NCBI ID   WP_021001669.1    Uniprot ID   A0AAP6BNP2
Organism   Streptococcus anginosus strain J4211     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context


Location: 927692..939002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SanJ4211_RS04650 (SanJ4211_0914c) - 927911..929155 (-) 1245 WP_003024605.1 NAD(P)H-dependent oxidoreductase -
  SanJ4211_RS04655 (SanJ4211_0915c) - 929174..929782 (-) 609 WP_003024603.1 NADPH-dependent FMN reductase -
  SanJ4211_RS04660 (SanJ4211_0916c) - 929802..930731 (-) 930 WP_021001667.1 FAD:protein FMN transferase -
  SanJ4211_RS04665 (SanJ4211_0917) nox 931022..932395 (+) 1374 WP_021001668.1 H2O-forming NADH oxidase -
  SanJ4211_RS04670 (SanJ4211_0918c) scnK 932692..934002 (-) 1311 WP_021001669.1 sensor histidine kinase Regulator
  SanJ4211_RS04675 (SanJ4211_0919c) scnR 934003..934692 (-) 690 WP_003024592.1 response regulator transcription factor Regulator
  SanJ4211_RS04680 (SanJ4211_0920) - 934864..935772 (+) 909 WP_021001670.1 ABC transporter ATP-binding protein -
  SanJ4211_RS04685 (SanJ4211_0921) - 935772..936512 (+) 741 WP_003024586.1 ABC transporter permease -
  SanJ4211_RS04690 (SanJ4211_0922) - 936509..937237 (+) 729 WP_003024584.1 ABC transporter permease -

Sequence


Protein


Download         Length: 436 a.a.        Molecular weight: 50020.82 Da        Isoelectric Point: 8.2547

>NTDB_id=157707 SanJ4211_RS04670 WP_021001669.1 932692..934002(-) (scnK) [Streptococcus anginosus strain J4211]
MDTVKFFTKLLTRYVLLLLALIIGLVFVYGLVFSSYFSFYGKEKPELLYTKIAQSSQQNNFNFDKSSKIEMDKQNTWAMV
LNQDGNIVQSYHLPQQLKRHYTNADMVKFSRWYLEDYPVFSYVRGQQILVLGYPKKHSLAKFNFYANTQFIRNFLSLGLV
FLGIILLLIFILLSRSKLRIKKEMDPIITAVTSLSQGQNIALNEKGNFSEIKTALNETSHILEESNTMKEQWIRGVSHDL
RNPLMLISGYNSQLEQQYGKGKQTEEIENQIQTMKEMISNLNMSYLLDNQKHHSEFSSLDLVAVLRTVIADILNNYETIT
LHFDLPTEAVLVKGEVTLLERAFRNLLLNSIIHSGSNQIDLTYQLSDNKVLIIIADQGDITAQKITELNQKSTNYESHGM
GTVITKQIIKLHQGEIVFLDNQPGLKVIISLPLVKD

Nucleotide


Download         Length: 1311 bp        

>NTDB_id=157707 SanJ4211_RS04670 WP_021001669.1 932692..934002(-) (scnK) [Streptococcus anginosus strain J4211]
ATGGATACCGTTAAATTTTTTACTAAGTTATTAACCAGGTATGTTCTATTACTCTTGGCTTTAATCATAGGACTTGTTTT
TGTTTATGGTTTGGTTTTCTCATCCTATTTTAGTTTCTATGGAAAGGAAAAACCGGAACTACTTTACACTAAAATCGCTC
AATCGAGTCAACAGAATAATTTTAATTTTGATAAAAGCAGCAAAATTGAAATGGATAAACAAAATACTTGGGCTATGGTA
CTGAATCAAGATGGCAATATTGTCCAATCTTATCATTTACCTCAACAGCTCAAAAGACATTATACCAATGCTGATATGGT
TAAATTTTCACGTTGGTATTTAGAAGATTACCCTGTTTTCTCCTATGTACGAGGTCAGCAAATTTTAGTTTTGGGCTATC
CTAAAAAGCATTCCTTAGCAAAATTTAATTTCTATGCTAATACACAATTTATTAGGAATTTTCTCAGTTTGGGACTTGTT
TTCTTGGGTATTATTCTTTTACTTATTTTTATTCTTTTGAGCCGATCAAAGCTACGCATTAAAAAGGAAATGGATCCGAT
TATTACTGCTGTCACTTCTTTGTCTCAGGGTCAAAATATTGCTCTTAATGAAAAGGGAAATTTCTCAGAAATTAAGACAG
CCCTTAATGAAACATCTCATATTTTGGAAGAAAGCAACACGATGAAAGAGCAATGGATTAGAGGGGTCAGTCATGATTTA
CGCAATCCTCTTATGCTCATATCAGGTTATAACAGTCAGCTAGAGCAGCAATATGGTAAAGGAAAGCAGACGGAGGAAAT
TGAAAATCAGATTCAAACTATGAAAGAAATGATTTCTAATCTCAATATGAGCTACTTATTGGATAATCAAAAGCATCACT
CCGAATTTTCGAGTCTTGATTTGGTTGCAGTCCTACGAACAGTAATTGCCGATATATTGAATAATTATGAAACAATTACA
CTTCATTTTGATTTGCCTACCGAGGCAGTGTTGGTAAAAGGAGAGGTAACTTTACTAGAAAGAGCTTTTAGAAATCTCTT
GCTTAATAGTATCATACACAGCGGTTCTAACCAGATTGATCTGACTTATCAATTATCTGATAATAAAGTGCTCATCATCA
TTGCGGATCAAGGAGATATTACAGCTCAAAAAATTACTGAGCTAAATCAAAAATCGACTAATTATGAATCACATGGTATG
GGAACGGTTATCACTAAACAAATTATTAAATTACATCAAGGTGAAATTGTTTTTTTAGACAATCAGCCAGGCTTAAAAGT
CATCATTTCTTTACCTTTAGTAAAGGACTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnK Streptococcus mutans UA159

83.486

100

0.835


Multiple sequence alignment