Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   RN86_RS06010 Genome accession   NZ_CP012648
Coordinates   1229967..1230632 (+) Length   221 a.a.
NCBI ID   WP_046165270.1    Uniprot ID   -
Organism   Streptococcus gordonii strain KCOM 1506 (= ChDC B679)     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1224967..1235632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN86_RS05990 (RN86_05985) - 1225214..1225960 (-) 747 WP_046165267.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  RN86_RS05995 (RN86_05990) - 1226065..1228434 (-) 2370 WP_046165268.1 cation-translocating P-type ATPase -
  RN86_RS06000 (RN86_05995) - 1228564..1229304 (+) 741 WP_046165938.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  RN86_RS06005 (RN86_06000) - 1229343..1229870 (+) 528 WP_046165269.1 HXXEE domain-containing protein -
  RN86_RS06010 (RN86_06005) comEA/celA/cilE 1229967..1230632 (+) 666 WP_046165270.1 helix-hairpin-helix domain-containing protein Machinery gene
  RN86_RS06015 (RN86_06010) comEC/celB 1230616..1232856 (+) 2241 WP_046165271.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RN86_RS06020 (RN86_06015) holA 1232947..1233984 (+) 1038 WP_045773123.1 DNA polymerase III subunit delta -
  RN86_RS06025 (RN86_06020) - 1234057..1234662 (+) 606 WP_045773124.1 superoxide dismutase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23529.24 Da        Isoelectric Point: 4.9605

>NTDB_id=156096 RN86_RS06010 WP_046165270.1 1229967..1230632(+) (comEA/celA/cilE) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
MIEDLIEKAKQYKIALSLGLLGAIVAGFILLQGRDQGGTDVQQLTEQTSSSSSYKDEKSNKSNEISQAETGDQLVTVDVK
GAVKKPGVYQLQSNSRVHDALEKAGGMTEEADLKSVNQAQKLSDEAVVYVAKVGENTVDVTASAHTSATSGTGQTKSALV
NLNTATEADFQTISGIGQKRAQDIIAYREANGRFKSVDDLKNVSGIGAKTLEKLKEYVTVD

Nucleotide


Download         Length: 666 bp        

>NTDB_id=156096 RN86_RS06010 WP_046165270.1 1229967..1230632(+) (comEA/celA/cilE) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
ATGATAGAAGATTTGATAGAAAAAGCAAAGCAATATAAAATTGCTTTAAGTCTAGGCTTATTAGGAGCGATTGTAGCAGG
CTTTATTTTACTACAGGGAAGAGACCAAGGGGGGACAGATGTCCAGCAATTGACAGAGCAAACTTCTTCCTCTAGCTCAT
ATAAGGATGAAAAAAGTAACAAAAGCAATGAGATCAGTCAAGCCGAGACAGGAGATCAGTTGGTTACAGTTGATGTCAAG
GGTGCGGTAAAAAAGCCTGGTGTCTATCAGTTGCAGTCTAATAGTCGGGTTCATGATGCTTTAGAGAAGGCAGGTGGCAT
GACGGAAGAAGCTGACTTAAAATCCGTCAATCAGGCTCAGAAACTGAGCGATGAGGCGGTAGTATATGTGGCTAAAGTAG
GTGAAAATACTGTAGACGTTACAGCAAGTGCCCATACAAGTGCAACATCGGGCACCGGTCAGACAAAATCAGCACTTGTC
AATCTTAATACAGCAACAGAAGCAGACTTTCAAACCATTTCTGGTATCGGACAAAAACGTGCTCAGGATATTATTGCTTA
CCGAGAAGCCAATGGCAGATTTAAGTCTGTAGATGATCTGAAAAATGTATCAGGTATTGGGGCCAAAACTCTAGAAAAAT
TAAAAGAATATGTCACAGTGGATTAA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(77-130)

Helix-hairpin-helix motif (HHH_3)

(158-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus pneumoniae D39

50.45

100

0.507
  comEA/celA/cilE Streptococcus pneumoniae R6

50.45

100

0.507
  comEA/celA/cilE Streptococcus mitis NCTC 12261

50.45

100

0.507
  comEA/celA/cilE Streptococcus pneumoniae Rx1

50.45

100

0.507
  comEA/celA/cilE Streptococcus mitis SK321

50

100

0.502
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

50

100

0.502
  comEA Streptococcus thermophilus LMD-9

58.784

66.968

0.394
  comEA Bacillus subtilis subsp. subtilis str. 168

40.758

95.475

0.389
  comEA Latilactobacillus sakei subsp. sakei 23K

35.27

100

0.385

Multiple sequence alignment