Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MOTHA_RS00675 Genome accession   NZ_CP012370
Coordinates   124021..124485 (+) Length   154 a.a.
NCBI ID   WP_011391677.1    Uniprot ID   -
Organism   Moorella thermoacetica strain DSM 2955     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 119021..129485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOTHA_RS00645 (MOTHA_c01290) - 119690..121120 (+) 1431 WP_011391671.1 aminopeptidase -
  MOTHA_RS00650 (MOTHA_c01300) yedF 121233..121814 (+) 582 WP_011391672.1 sulfurtransferase-like selenium metabolism protein YedF -
  MOTHA_RS00655 (MOTHA_c01310) - 121828..122688 (+) 861 WP_011391673.1 HEAT repeat domain-containing protein -
  MOTHA_RS00660 (MOTHA_c01320) - 122750..122935 (+) 186 WP_025773685.1 DUF951 domain-containing protein -
  MOTHA_RS00665 (MOTHA_c01330) - 122922..123431 (-) 510 WP_011391675.1 CGGC domain-containing protein -
  MOTHA_RS00670 (MOTHA_c01340) rpsF 123701..123997 (+) 297 WP_011391676.1 30S ribosomal protein S6 -
  MOTHA_RS00675 (MOTHA_c01350) ssbA 124021..124485 (+) 465 WP_011391677.1 single-stranded DNA-binding protein Machinery gene
  MOTHA_RS00680 (MOTHA_c01360) rpsR 124721..124948 (+) 228 WP_011391678.1 30S ribosomal protein S18 -
  MOTHA_RS00685 (MOTHA_c01370) - 125034..126020 (+) 987 WP_011391679.1 YybS family protein -
  MOTHA_RS00690 (MOTHA_c01380) rplI 126026..126478 (+) 453 WP_011391680.1 50S ribosomal protein L9 -
  MOTHA_RS00695 (MOTHA_c01390) lonC 126483..128450 (+) 1968 WP_011391681.1 Lon family ATP-dependent protease -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16716.70 Da        Isoelectric Point: 4.8070

>NTDB_id=153865 MOTHA_RS00675 WP_011391677.1 124021..124485(+) (ssbA) [Moorella thermoacetica strain DSM 2955]
MLNRVILIGRLTRDPELRYTASGVAMTTFTLAVDRNFVNQQGERGTDFIRITVWRKLAETCANHLGKGRLVAVDGRLQTR
TYETPDGQKRSVTDVVAEDVRFLDWPKEGRGPAGSGPVAGPGTGGGMETAGSGFNQDFSDLGTEVEIGEDDLPF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=153865 MOTHA_RS00675 WP_011391677.1 124021..124485(+) (ssbA) [Moorella thermoacetica strain DSM 2955]
ATGTTAAACCGGGTAATTCTAATCGGCCGCCTCACCCGTGACCCCGAGCTGCGTTATACAGCCAGCGGTGTAGCCATGAC
TACCTTTACCCTGGCGGTAGACCGTAATTTTGTCAACCAGCAGGGGGAACGGGGTACTGACTTCATCCGGATTACCGTCT
GGCGCAAGCTGGCCGAAACCTGCGCCAACCACCTGGGCAAGGGTCGCCTGGTGGCCGTCGACGGCCGCCTGCAGACGCGT
ACCTACGAAACCCCCGACGGCCAGAAACGTTCTGTAACGGACGTGGTAGCCGAGGATGTCCGTTTCCTGGACTGGCCCAA
AGAAGGCCGGGGACCGGCTGGCAGTGGTCCGGTTGCTGGTCCGGGGACAGGTGGCGGTATGGAGACGGCCGGGAGCGGTT
TCAACCAGGATTTCAGTGATCTTGGCACCGAGGTGGAAATAGGAGAAGACGATCTCCCCTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.701

100

0.539
  ssb Latilactobacillus sakei subsp. sakei 23K

42.105

100

0.468
  ssbB/cilA Streptococcus pneumoniae TIGR4

38.312

100

0.383
  ssbB/cilA Streptococcus pneumoniae D39

37.662

100

0.377
  ssbB/cilA Streptococcus pneumoniae R6

37.662

100

0.377
  ssbB/cilA Streptococcus mitis SK321

37.662

100

0.377
  ssbB/cilA Streptococcus mitis NCTC 12261

37.662

100

0.377
  ssbB/cilA Streptococcus pneumoniae Rx1

37.662

100

0.377
  ssbB Bacillus subtilis subsp. subtilis str. 168

52.336

69.481

0.364

Multiple sequence alignment