Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AC241_RS18650 Genome accession   NZ_CP012099
Coordinates   3645675..3646913 (-) Length   412 a.a.
NCBI ID   WP_050844447.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain HS18-1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3640675..3651913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AC241_RS18625 (AC241_18640) spoVS 3641084..3641344 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  AC241_RS18630 (AC241_18645) - 3641494..3642288 (-) 795 WP_029443107.1 TIGR00282 family metallophosphoesterase -
  AC241_RS18635 (AC241_18650) rny 3642451..3644016 (-) 1566 WP_000099769.1 ribonuclease Y -
  AC241_RS18645 (AC241_18660) recA 3644499..3645530 (-) 1032 WP_001283854.1 recombinase RecA Machinery gene
  AC241_RS18650 (AC241_18665) cinA 3645675..3646913 (-) 1239 WP_050844447.1 competence/damage-inducible protein A Machinery gene
  AC241_RS18655 (AC241_18670) pgsA 3646934..3647512 (-) 579 WP_001052967.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AC241_RS18660 (AC241_18675) - 3647576..3648487 (-) 912 WP_029443110.1 helix-turn-helix domain-containing protein -
  AC241_RS18665 (AC241_18680) - 3648509..3649294 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  AC241_RS18670 (AC241_18685) - 3649433..3649681 (-) 249 WP_000114504.1 DUF3243 domain-containing protein -
  AC241_RS18675 (AC241_18690) ymfI 3649757..3650470 (-) 714 WP_043936383.1 elongation factor P 5-aminopentanone reductase -
  AC241_RS18680 (AC241_18695) yfmH 3650571..3651857 (-) 1287 WP_043936384.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45393.71 Da        Isoelectric Point: 5.6809

>NTDB_id=151393 AC241_RS18650 WP_050844447.1 3645675..3646913(-) (cinA) [Bacillus thuringiensis strain HS18-1]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIEAAEERADILIFTGGLGPTKDDLTKET
IAASLDEKLVYDEKALALISNYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGVNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVSEAEKLIQHVED
LILERVGEFFYGYDQEFLHYKAIELLKRKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYHNDVKQHVLRVPEEV
LHTDGAVSKECARYLAENVKDLLKADIGISFTGVAGPDASEQKEPGTVFVGLAINGEQTAVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=151393 AC241_RS18650 WP_050844447.1 3645675..3646913(-) (cinA) [Bacillus thuringiensis strain HS18-1]
ATGAATGCTGAGATTATTGCGGTTGGAACTGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTGGCTTCAATTGGAATTAACGTTTACTATCATACTGTTGTTGGTGATAATAATAAGCGACTGCAAAAGGCGATTG
AAGCTGCGGAAGAACGTGCTGATATACTTATTTTTACAGGTGGATTAGGACCGACAAAAGATGATTTAACGAAAGAAACG
ATAGCGGCTAGTTTAGATGAAAAGCTTGTGTATGATGAAAAGGCATTAGCCTTAATAAGTAATTACTTTAAGCGTACAGG
CCGTGAATTTACGGAGAATAATAAAAAGCAAGCGCTCGTTTTAAATGGAGCAACAGTATTTGCAAATGACCACGGTATGG
CGCCGGGTATGGGGGTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGGCCGCCAAAAGAAATGAAACCAATGTAT
GTAAGTTACGTAGAGCCTTTTTTACGTAATTTTACAACAGGAGAAAACATTTATTCTCGTGTGCTTCGTTTCTTCGGTAT
TGGGGAGTCCCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACAAACCCAACAATTGCCCCGCTAGCAAATG
ATGGAGAAGTGACATTACGTTTAACCGCTAAGCATCAAAATGTTAGCGAAGCGGAGAAACTAATTCAACATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGAATTTTTGCATTATAAGGCAATCGAGTTATTGAA
GAGAAAAGGGTTAACTTTAGCATGTGCAGAAAGTTTAACAGGTGGTCTTTTTGGAAATCAAGTAACTGAAAATGCTGGTG
TTTCTTCTGTATTTAAGGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTTTTACGTGTGCCTGAAGAAGTG
TTGCATACTGATGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAAGGATTTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGGCCAGATGCTTCAGAACAGAAAGAGCCAGGAACAGTATTTGTTGGATTAGCGA
TTAATGGTGAACAAACTGCAGTCTTTCCTCTTAATTTAAGTGGAAGTCGTCAACAAATTAGAGAACGATCAGCAAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.537

99.515

0.583
  cinA Streptococcus pneumoniae TIGR4

46.778

100

0.476
  cinA Streptococcus mitis SK321

46.539

100

0.473
  cinA Streptococcus pneumoniae Rx1

46.301

100

0.471
  cinA Streptococcus pneumoniae R6

46.301

100

0.471
  cinA Streptococcus pneumoniae D39

46.062

100

0.468
  cinA Streptococcus mitis NCTC 12261

45.823

100

0.466
  cinA Streptococcus mutans UA159

45.32

98.544

0.447
  cinA Streptococcus suis isolate S10

40.584

91.505

0.371

Multiple sequence alignment