Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | AC613_RS07105 | Genome accession | NZ_CP012053 |
| Coordinates | 1546447..1547703 (-) | Length | 418 a.a. |
| NCBI ID | WP_007973903.1 | Uniprot ID | A0AB34Q195 |
| Organism | Xanthomonas citri pv. fuscans strain ISO118C1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| IS/Tn | 1548677..1549774 | 1546447..1547703 | flank | 974 |
Gene organization within MGE regions
Location: 1546447..1549774
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AC613_RS07105 (AC613_06665) | pilC | 1546447..1547703 (-) | 1257 | WP_007973903.1 | type II secretion system F family protein | Machinery gene |
| AC613_RS07110 (AC613_06670) | pilE | 1548030..1548470 (+) | 441 | WP_005934296.1 | pilin | Machinery gene |
| AC613_RS24390 | - | 1548534..1548680 (-) | 147 | WP_158526406.1 | hypothetical protein | - |
| AC613_RS07115 (AC613_06675) | - | 1548677..1549774 (-) | 1098 | WP_046831597.1 | IS5 family transposase | - |
Sequence
Protein
Download Length: 418 a.a. Molecular weight: 45939.35 Da Isoelectric Point: 10.3003
>NTDB_id=150890 AC613_RS07105 WP_007973903.1 1546447..1547703(-) (pilC) [Xanthomonas citri pv. fuscans strain ISO118C1]
MSVARSSIKKQPVDRNVSEMIPFVWEGTDKRGVKMKGEQQARNANMLRAELRRQGITPTVVKTKPKPLFGAAGKKISPKD
IAFFSRQMATMMKSGVPIVGALEIIGEGHKNPRMKKMVGQIRADIEGGSSLYEAISRHPVQFDDLYRNLVRAGEGAGVLE
TVLDTVANYKENIEALKGKIKKALFYPAMVMAVAIIVSGILLVFVVPQFEDVFKGFGAELPAFTQMIVAASRFMVSYWWF
MLLASVAAIAGFIFAYKRSPRMRHGMDRLVLKFPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALSIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTSIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGSVV
MSVARSSIKKQPVDRNVSEMIPFVWEGTDKRGVKMKGEQQARNANMLRAELRRQGITPTVVKTKPKPLFGAAGKKISPKD
IAFFSRQMATMMKSGVPIVGALEIIGEGHKNPRMKKMVGQIRADIEGGSSLYEAISRHPVQFDDLYRNLVRAGEGAGVLE
TVLDTVANYKENIEALKGKIKKALFYPAMVMAVAIIVSGILLVFVVPQFEDVFKGFGAELPAFTQMIVAASRFMVSYWWF
MLLASVAAIAGFIFAYKRSPRMRHGMDRLVLKFPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALSIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTSIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGSVV
Nucleotide
Download Length: 1257 bp
>NTDB_id=150890 AC613_RS07105 WP_007973903.1 1546447..1547703(-) (pilC) [Xanthomonas citri pv. fuscans strain ISO118C1]
ATGTCAGTCGCTCGCAGCAGCATCAAGAAGCAACCGGTAGACCGAAATGTCAGTGAAATGATCCCGTTTGTCTGGGAAGG
CACAGACAAGCGTGGCGTCAAGATGAAGGGGGAGCAGCAGGCCCGCAATGCAAACATGCTGCGTGCAGAGCTTCGTCGCC
AGGGAATCACTCCTACAGTTGTAAAGACTAAACCAAAACCGCTTTTTGGCGCTGCGGGCAAAAAGATTTCACCAAAAGAC
ATCGCATTCTTCAGCCGCCAGATGGCAACGATGATGAAGTCCGGAGTTCCCATAGTTGGCGCACTTGAAATTATCGGCGA
AGGGCACAAAAACCCTCGCATGAAAAAAATGGTTGGTCAGATTCGAGCTGATATCGAAGGAGGTTCTTCACTTTACGAAG
CTATTTCTCGACATCCAGTCCAGTTTGACGACTTGTATCGAAATCTGGTGCGCGCGGGCGAGGGTGCTGGCGTCTTGGAA
ACTGTCCTAGATACAGTTGCGAACTATAAAGAAAATATTGAGGCCCTTAAGGGCAAAATTAAAAAAGCCCTGTTTTATCC
TGCCATGGTAATGGCCGTCGCAATTATTGTTAGCGGCATACTATTAGTTTTCGTGGTCCCTCAATTTGAAGATGTATTCA
AAGGTTTTGGAGCAGAACTTCCCGCTTTTACGCAAATGATTGTAGCAGCATCTCGTTTCATGGTGTCTTATTGGTGGTTC
ATGCTACTAGCAAGTGTCGCAGCGATAGCTGGCTTCATCTTTGCCTACAAACGCTCACCGCGCATGCGCCACGGAATGGA
CAGGCTTGTTTTGAAGTTTCCAGTGATCGGGCAGATTATGCACAATAGCTCGATTGCTCGATTTGCCCGAACCACCGCGG
TCACGTTTAAAGCTGGCGTACCCCTTGTAGAAGCCCTAAGTATTGTTGCCGGTGCGACTGGCAATAAGGTATATGAGGAA
GCTGTGCTGCGGATGCGCGACGACGTCTCTGTAGGATACCCCGTGAACATGGCCATGAAGCAAGTAAACCTGTTCCCGCA
TATGGTGATTCAAATGACATCCATTGGCGAGGAAGCGGGCGCACTTGATGCAATGCTATTCAAAGTCGCGGAGTATTTCG
AGCAGGAAGTAAATAATGCCGTGGATGCGCTAAGCAGCCTATTGGAGCCGTTGATCATGGTATTCATCGGTACAATTGTT
GGCGGCATGGTGATCGGCATGTATCTTCCGATTTTCAAACTTGGCTCGGTGGTATAA
ATGTCAGTCGCTCGCAGCAGCATCAAGAAGCAACCGGTAGACCGAAATGTCAGTGAAATGATCCCGTTTGTCTGGGAAGG
CACAGACAAGCGTGGCGTCAAGATGAAGGGGGAGCAGCAGGCCCGCAATGCAAACATGCTGCGTGCAGAGCTTCGTCGCC
AGGGAATCACTCCTACAGTTGTAAAGACTAAACCAAAACCGCTTTTTGGCGCTGCGGGCAAAAAGATTTCACCAAAAGAC
ATCGCATTCTTCAGCCGCCAGATGGCAACGATGATGAAGTCCGGAGTTCCCATAGTTGGCGCACTTGAAATTATCGGCGA
AGGGCACAAAAACCCTCGCATGAAAAAAATGGTTGGTCAGATTCGAGCTGATATCGAAGGAGGTTCTTCACTTTACGAAG
CTATTTCTCGACATCCAGTCCAGTTTGACGACTTGTATCGAAATCTGGTGCGCGCGGGCGAGGGTGCTGGCGTCTTGGAA
ACTGTCCTAGATACAGTTGCGAACTATAAAGAAAATATTGAGGCCCTTAAGGGCAAAATTAAAAAAGCCCTGTTTTATCC
TGCCATGGTAATGGCCGTCGCAATTATTGTTAGCGGCATACTATTAGTTTTCGTGGTCCCTCAATTTGAAGATGTATTCA
AAGGTTTTGGAGCAGAACTTCCCGCTTTTACGCAAATGATTGTAGCAGCATCTCGTTTCATGGTGTCTTATTGGTGGTTC
ATGCTACTAGCAAGTGTCGCAGCGATAGCTGGCTTCATCTTTGCCTACAAACGCTCACCGCGCATGCGCCACGGAATGGA
CAGGCTTGTTTTGAAGTTTCCAGTGATCGGGCAGATTATGCACAATAGCTCGATTGCTCGATTTGCCCGAACCACCGCGG
TCACGTTTAAAGCTGGCGTACCCCTTGTAGAAGCCCTAAGTATTGTTGCCGGTGCGACTGGCAATAAGGTATATGAGGAA
GCTGTGCTGCGGATGCGCGACGACGTCTCTGTAGGATACCCCGTGAACATGGCCATGAAGCAAGTAAACCTGTTCCCGCA
TATGGTGATTCAAATGACATCCATTGGCGAGGAAGCGGGCGCACTTGATGCAATGCTATTCAAAGTCGCGGAGTATTTCG
AGCAGGAAGTAAATAATGCCGTGGATGCGCTAAGCAGCCTATTGGAGCCGTTGATCATGGTATTCATCGGTACAATTGTT
GGCGGCATGGTGATCGGCATGTATCTTCCGATTTTCAAACTTGGCTCGGTGGTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Acinetobacter baylyi ADP1 |
53.102 |
96.411 |
0.512 |
| pilC | Pseudomonas stutzeri DSM 10701 |
53.283 |
94.737 |
0.505 |
| pilC | Acinetobacter baumannii D1279779 |
52.109 |
96.411 |
0.502 |
| pilC | Legionella pneumophila strain ERS1305867 |
51.478 |
97.129 |
0.5 |
| pilG | Neisseria gonorrhoeae MS11 |
45.5 |
95.694 |
0.435 |
| pilG | Neisseria meningitidis 44/76-A |
45 |
95.694 |
0.431 |
| pilC | Vibrio cholerae strain A1552 |
42.677 |
94.737 |
0.404 |
| pilC | Vibrio campbellii strain DS40M4 |
39.646 |
94.737 |
0.376 |
| pilC | Thermus thermophilus HB27 |
37.94 |
95.215 |
0.361 |