Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | OB07_RS23960 | Genome accession | NZ_CP014948 |
| Coordinates | 5170214..5170678 (-) | Length | 154 a.a. |
| NCBI ID | WP_023090842.1 | Uniprot ID | A3RJ48 |
| Organism | Pseudomonas aeruginosa strain N17-1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 5165214..5175678
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OB07_RS23945 (OB07_04795) | nadC | 5167714..5168562 (+) | 849 | WP_003116246.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| OB07_RS23955 (OB07_04797) | - | 5168743..5170056 (-) | 1314 | WP_228845953.1 | O-antigen ligase family protein | - |
| OB07_RS23960 (OB07_04798) | pilA | 5170214..5170678 (-) | 465 | WP_023090842.1 | pilin | Machinery gene |
| OB07_RS23965 (OB07_04799) | pilB | 5170909..5172609 (+) | 1701 | WP_003107297.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| OB07_RS23970 (OB07_04800) | pilC | 5172613..5173830 (+) | 1218 | WP_034038724.1 | type II secretion system F family protein | Machinery gene |
| OB07_RS23975 (OB07_04801) | pilD | 5173831..5174703 (+) | 873 | WP_023084740.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| OB07_RS23980 (OB07_04802) | coaE | 5174700..5175311 (+) | 612 | WP_003112838.1 | dephospho-CoA kinase | - |
| OB07_RS23985 (OB07_04803) | yacG | 5175308..5175508 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
Sequence
Protein
Download Length: 154 a.a. Molecular weight: 16023.30 Da Isoelectric Point: 9.0066
>NTDB_id=150579 OB07_RS23960 WP_023090842.1 5170214..5170678(-) (pilA) [Pseudomonas aeruginosa strain N17-1]
MKAQKGFTLIELMIVVAIIGILAAIAIPQYQDYTARTQVTRAVSEISALKTAAESAILEGKKLVSSDTPGNNEYDLGFTS
STLLTGSGKGQIKIDKADTATPEISGTLGNSSGKGIAGAVITVKRDDKGVWTCGITGSPTNWKTNYAPANCPKS
MKAQKGFTLIELMIVVAIIGILAAIAIPQYQDYTARTQVTRAVSEISALKTAAESAILEGKKLVSSDTPGNNEYDLGFTS
STLLTGSGKGQIKIDKADTATPEISGTLGNSSGKGIAGAVITVKRDDKGVWTCGITGSPTNWKTNYAPANCPKS
Nucleotide
Download Length: 465 bp
>NTDB_id=150579 OB07_RS23960 WP_023090842.1 5170214..5170678(-) (pilA) [Pseudomonas aeruginosa strain N17-1]
ATGAAAGCTCAGAAGGGTTTTACTCTGATCGAACTGATGATCGTGGTCGCGATCATCGGCATCCTGGCCGCCATTGCCAT
CCCGCAATACCAGGACTACACCGCCCGTACCCAGGTGACCCGTGCCGTGAGTGAAATCAGCGCGCTGAAGACCGCTGCGG
AGTCGGCGATTCTGGAAGGCAAGAAGCTCGTTTCCAGCGATACCCCCGGAAACAATGAATATGATCTTGGCTTTACCAGC
TCTACTCTGCTTACTGGTAGCGGTAAGGGGCAGATCAAGATTGACAAAGCTGATACCGCAACTCCGGAGATTTCTGGTAC
TCTGGGCAACTCTTCTGGTAAGGGTATCGCTGGCGCTGTCATCACTGTCAAGCGTGATGATAAAGGAGTATGGACCTGCG
GCATCACTGGTTCGCCGACCAACTGGAAAACCAACTACGCCCCGGCTAACTGCCCGAAATCCTAA
ATGAAAGCTCAGAAGGGTTTTACTCTGATCGAACTGATGATCGTGGTCGCGATCATCGGCATCCTGGCCGCCATTGCCAT
CCCGCAATACCAGGACTACACCGCCCGTACCCAGGTGACCCGTGCCGTGAGTGAAATCAGCGCGCTGAAGACCGCTGCGG
AGTCGGCGATTCTGGAAGGCAAGAAGCTCGTTTCCAGCGATACCCCCGGAAACAATGAATATGATCTTGGCTTTACCAGC
TCTACTCTGCTTACTGGTAGCGGTAAGGGGCAGATCAAGATTGACAAAGCTGATACCGCAACTCCGGAGATTTCTGGTAC
TCTGGGCAACTCTTCTGGTAAGGGTATCGCTGGCGCTGTCATCACTGTCAAGCGTGATGATAAAGGAGTATGGACCTGCG
GCATCACTGGTTCGCCGACCAACTGGAAAACCAACTACGCCCCGGCTAACTGCCCGAAATCCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Acinetobacter baumannii strain A118 |
43.949 |
100 |
0.448 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
44.516 |
100 |
0.448 |
| pilA | Pseudomonas aeruginosa PAK |
41.139 |
100 |
0.422 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
41.447 |
98.701 |
0.409 |
| pilA | Vibrio cholerae strain A1552 |
41.447 |
98.701 |
0.409 |
| pilA | Vibrio cholerae C6706 |
41.447 |
98.701 |
0.409 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
40.94 |
96.753 |
0.396 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
35.882 |
100 |
0.396 |