Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ACP86_RS13500 Genome accession   NZ_CP011929
Coordinates   2920025..2922094 (+) Length   689 a.a.
NCBI ID   WP_176443082.1    Uniprot ID   -
Organism   Marinobacter sp. CP1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2915025..2927094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACP86_RS13480 (ACP86_13475) pilM 2917173..2918234 (+) 1062 WP_053114371.1 pilus assembly protein PilM Machinery gene
  ACP86_RS13485 (ACP86_13480) - 2918234..2918797 (+) 564 WP_053114373.1 PilN domain-containing protein -
  ACP86_RS13490 (ACP86_13485) - 2918797..2919408 (+) 612 WP_008170795.1 type 4a pilus biogenesis protein PilO -
  ACP86_RS13495 (ACP86_13490) - 2919411..2919959 (+) 549 WP_008170793.1 pilus assembly protein PilP -
  ACP86_RS13500 (ACP86_13495) pilQ 2920025..2922094 (+) 2070 WP_176443082.1 type IV pilus secretin PilQ Machinery gene
  ACP86_RS13505 (ACP86_13500) aroK 2922231..2922797 (+) 567 WP_008170790.1 shikimate kinase AroK -
  ACP86_RS13510 (ACP86_13505) aroB 2922790..2923884 (+) 1095 WP_053114378.1 3-dehydroquinate synthase -
  ACP86_RS13515 (ACP86_13510) - 2923940..2925433 (+) 1494 WP_053114380.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 689 a.a.        Molecular weight: 74012.97 Da        Isoelectric Point: 4.2894

>NTDB_id=149356 ACP86_RS13500 WP_176443082.1 2920025..2922094(+) (pilQ) [Marinobacter sp. CP1]
MFRKLNVYVSVIAFGLLSGLANAVTLEDVSFSSLPGERLEVTLQFDGAPPEPSGYTIERPARIAVDLRDTTSGLDSRSVP
LGSGNAQSMTVVETKDRTRLIFNLVELVPYDTVRSGNSLVMTIGGQSEGVVASASTSSSQSSGTTNAAPSNTLAGVDFRR
GKDGEGRVLVDLGSSSTPVDLTERSGKIRLTMNGIAVPADLRRRLDVTDFATPVTRIDTFVEDGNAVVEISPQGNYDYIA
YQSGTQFTVSVEELSQEEAESRREEKFPYTGDKLSLNFQDIEVRSVLQLIADFTGLNLVASDTVGGSITLRLQNVPWDQA
LDLILKTKGLDKRQIGNVLLVAPADEIAAREKLELETNKQIAELAPVRLDIIQVNYAKAADIVGLIQEDEELISDRGFVS
SDVRTNTISVRETAEKLDEIRRLVSTWDVPVRQVSIEARIVRAQTNVAENLGVRWGGAAYDISGDNIFSVGGGLDGVQDA
RDSAATPGSFQTSFPGALAVDLGVSGDGASSFAIGWGSDDFLVDLELSALESDGQAEVVSQPRVVTADRQTASIKSGEEI
PYQKASSSGATSVSFKEAVLSLVVTPQITPDDKIIMDLVVNQDSRGEVTAGIPSINTNEVTTQVLVGNGETVVLGGIFQS
EVATQTTKTPFLGDIPYLGRIFKRTEHIDERSELLIFITPKIIKNDLLR

Nucleotide


Download         Length: 2070 bp        

>NTDB_id=149356 ACP86_RS13500 WP_176443082.1 2920025..2922094(+) (pilQ) [Marinobacter sp. CP1]
ATGTTCAGAAAACTCAATGTATACGTCAGCGTGATTGCTTTTGGGTTGTTATCCGGCCTGGCCAACGCGGTCACGCTGGA
AGACGTGTCGTTTTCGTCGCTACCGGGCGAGCGGCTTGAGGTGACACTGCAATTTGATGGGGCGCCACCGGAACCCTCCG
GTTACACCATTGAGCGCCCCGCTCGGATCGCGGTGGATCTTCGGGATACGACCAGTGGTCTTGATAGCCGAAGCGTGCCT
CTGGGGTCGGGTAATGCCCAGAGCATGACCGTGGTCGAAACCAAGGATCGAACACGGTTGATTTTCAACCTTGTCGAGCT
GGTGCCCTATGACACAGTTCGTTCTGGTAACTCCCTGGTCATGACGATTGGTGGGCAGTCTGAGGGAGTTGTTGCCAGCG
CCTCAACCTCCTCTTCACAGAGCAGTGGAACAACCAACGCGGCACCATCTAATACTCTTGCCGGCGTCGATTTCCGTCGT
GGCAAAGACGGCGAAGGACGTGTGCTTGTGGATCTTGGCAGCTCCAGCACGCCAGTCGACCTGACAGAGCGTTCCGGCAA
AATTCGTCTTACGATGAATGGTATTGCGGTGCCTGCAGATCTGCGGCGCCGGCTCGACGTGACGGATTTCGCCACGCCGG
TTACTCGCATTGACACCTTTGTGGAAGATGGCAATGCCGTTGTTGAGATCAGCCCCCAGGGCAACTACGACTACATCGCT
TACCAGTCTGGCACTCAGTTTACCGTCAGTGTCGAGGAGCTGAGTCAGGAAGAAGCGGAATCCCGCCGGGAAGAGAAGTT
CCCTTATACCGGCGACAAGCTGTCCCTGAATTTCCAGGATATCGAAGTGCGCTCGGTGCTCCAGTTGATCGCCGACTTCA
CTGGACTGAATCTGGTGGCCAGTGACACCGTAGGTGGCAGCATCACTCTGCGACTTCAGAATGTACCCTGGGATCAGGCG
CTTGATCTGATCCTGAAGACCAAAGGTCTTGATAAGCGTCAGATCGGTAATGTGTTGCTGGTAGCCCCTGCCGATGAAAT
TGCAGCTAGGGAGAAGCTGGAGCTCGAGACCAACAAGCAGATCGCCGAATTGGCACCGGTTCGCCTGGATATTATTCAGG
TAAATTACGCAAAGGCAGCCGATATCGTTGGGTTGATTCAAGAGGACGAAGAACTGATCTCTGATCGCGGTTTCGTTTCC
TCGGATGTCCGCACCAACACCATCAGTGTTCGTGAGACTGCAGAAAAGCTTGATGAAATCCGCCGCCTGGTCTCTACATG
GGATGTGCCGGTACGGCAGGTCTCTATTGAGGCCCGGATTGTGCGTGCCCAGACCAACGTAGCTGAGAACCTTGGTGTTC
GCTGGGGTGGCGCAGCATATGACATTAGCGGAGACAACATCTTTTCGGTCGGCGGTGGTCTTGATGGCGTGCAAGATGCC
CGTGATTCCGCCGCGACTCCGGGATCTTTCCAGACGTCTTTCCCCGGCGCACTTGCGGTAGATCTGGGAGTGAGTGGTGA
CGGAGCGTCCTCCTTCGCAATCGGTTGGGGCAGCGACGACTTCCTGGTGGATCTTGAACTCTCGGCCCTTGAGAGCGATG
GTCAGGCTGAAGTGGTCTCCCAGCCACGCGTTGTAACTGCCGATCGCCAGACGGCGTCGATCAAGTCTGGTGAGGAGATC
CCTTATCAGAAAGCGTCCTCAAGCGGTGCGACGTCTGTTTCATTCAAGGAAGCCGTGCTCTCGCTCGTGGTCACGCCGCA
GATTACACCAGATGACAAGATCATCATGGACCTGGTGGTCAATCAGGACTCCCGAGGCGAGGTAACTGCAGGTATCCCGT
CCATCAACACCAATGAAGTCACCACACAGGTTCTGGTCGGCAATGGCGAGACAGTGGTTCTTGGCGGTATCTTCCAGTCG
GAAGTGGCGACCCAGACCACCAAGACCCCATTCCTGGGCGATATCCCTTACCTGGGGCGTATCTTCAAGCGCACCGAACA
CATTGACGAGCGCAGCGAGCTGTTGATCTTCATTACGCCGAAGATCATCAAGAACGATCTGCTTCGTTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(371-433)

AMIN domain (AMIN)

(38-121)

Secretin and TonB N terminus short domain (STN)

(297-343)

Bacterial type II and III secretion system protein (Secretin)

(529-684)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

49.155

100

0.507
  pilQ Acinetobacter baumannii strain A118

39.945

100

0.424
  pilQ Acinetobacter baumannii D1279779

39.945

100

0.424
  comQ Acinetobacter baylyi ADP1

40.537

100

0.417
  pilQ Legionella pneumophila strain ERS1305867

40.741

97.968

0.399
  pilQ Legionella pneumophila strain Lp02

40.593

97.968

0.398

Multiple sequence alignment