Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   AB691_RS03030 Genome accession   NZ_CP011854
Coordinates   659835..661955 (+) Length   706 a.a.
NCBI ID   WP_048328492.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain SLG510A3-8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 654835..666955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB691_RS03010 (AB691_0624) comM 656998..658062 (+) 1065 WP_048328486.1 pilus assembly protein PilM Machinery gene
  AB691_RS03015 (AB691_0625) pilN 658062..658634 (+) 573 WP_048328488.1 type 4a pilus biogenesis protein PilN -
  AB691_RS03020 pilO 658631..659257 (+) 627 WP_048328490.1 type 4a pilus biogenesis protein PilO -
  AB691_RS03025 (AB691_0628) pilP 659254..659781 (+) 528 WP_045159373.1 type 4a pilus biogenesis lipoprotein PilP -
  AB691_RS03030 (AB691_0629) pilQ 659835..661955 (+) 2121 WP_048328492.1 type IV pilus secretin PilQ Machinery gene
  AB691_RS03035 (AB691_0630) aroK 661959..662504 (+) 546 WP_017244294.1 shikimate kinase AroK -
  AB691_RS03040 (AB691_0631) aroB 662528..663631 (+) 1104 WP_048328493.1 3-dehydroquinate synthase -
  AB691_RS03045 (AB691_0632) - 663642..665223 (+) 1582 Protein_609 AAA family ATPase -

Sequence

Protein


Download         Length: 706 a.a.        Molecular weight: 75652.76 Da        Isoelectric Point: 4.6704

>NTDB_id=149008 AB691_RS03030 WP_048328492.1 659835..661955(+) (pilQ) [Stutzerimonas stutzeri strain SLG510A3-8]
MNTTLSRLGVSLLAAFLSPALLAANLNALDVAALPGDRVELKLAFDEPVASPRGYTLDQPARIALDLPGVSNNLGAKNRE
LGVGNARSVTVVEAQGRTRLIVNLTALVPYSTRVDGNNLFVVLGESSGTTSPAAASAAVTAPIAKSTPVQPMAAGKAIDN
IDFRRGEDGAGNVVITLSDPSVGSTIEEQGGKIRVVFAKAELPEALRVRLDVQDFATPVKFVDSTAQAGGASIAIEPTGR
YDYLAYQTDNKLTISVKPLTEEEADKRKADRFAYSGEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVSGNITLRLQNV
PWDQALDLVLKTKGLDKRQVGNVLLVAPADEIAARERQELESQRQIAELAPLRREVVQVNYAKAADIARLFQSVTSNGAV
AEDRGSIAVDDRTNNIIAYQTQERLDELRRIVAQLDIPVRQVMIEARIVEANVGYDKALGVRWGGNYTNDNWGLYGKDGA
IGRDEDGGRYLLPGTDKVGNFTLEDALAPVPFVDLGVLNSTAGIGIGYVSDHGILDLQLSAMEKTGNGEVVSQPKVVTAD
KETAKILKGAEIPYQEASSSGATSTSFKEAALSLEVTPQITPDNRIIMEVKVTKDAPDFANALNGVPPINKNEVNAKVLV
TDGETIVIGGVFSNSQISSIEKVPFLGDVPFVGRLFRRDIVEDKKSELLVFLTPRILNYRAVAVGQ

Nucleotide


Download         Length: 2121 bp        

>NTDB_id=149008 AB691_RS03030 WP_048328492.1 659835..661955(+) (pilQ) [Stutzerimonas stutzeri strain SLG510A3-8]
ATGAACACTACCCTTTCTCGCCTGGGCGTATCTCTGCTGGCGGCATTTCTTTCGCCAGCACTGCTGGCGGCCAATCTCAA
CGCCTTGGATGTGGCTGCTTTGCCGGGCGATCGGGTTGAGTTGAAACTGGCATTTGACGAGCCTGTCGCGTCACCTCGTG
GCTACACGCTGGATCAGCCTGCACGCATTGCCCTGGATCTTCCAGGCGTATCCAACAACCTGGGGGCCAAAAACCGGGAG
CTGGGCGTTGGTAATGCGCGCAGCGTAACGGTCGTCGAGGCTCAAGGGCGCACCCGGCTCATCGTCAATCTGACCGCGCT
TGTTCCGTATTCCACTCGAGTGGATGGGAACAATCTGTTTGTCGTGCTGGGAGAGAGCTCGGGGACGACCAGCCCTGCGG
CTGCATCCGCCGCGGTCACTGCTCCGATTGCCAAGTCTACTCCGGTACAGCCGATGGCGGCCGGCAAGGCGATCGACAAT
ATCGATTTTCGCCGCGGTGAGGATGGTGCCGGAAACGTGGTAATCACACTGTCCGATCCGTCGGTAGGTTCGACTATCGA
AGAGCAGGGAGGAAAGATCCGCGTTGTGTTCGCCAAGGCGGAGCTGCCTGAAGCACTGCGTGTTCGGCTCGACGTTCAGG
ATTTCGCTACGCCGGTGAAGTTTGTCGACTCGACCGCTCAGGCAGGTGGTGCCAGTATCGCCATCGAGCCTACTGGGCGA
TACGATTATCTCGCCTACCAGACAGACAATAAGCTGACCATCAGCGTAAAGCCTCTTACAGAAGAAGAGGCCGATAAGCG
CAAGGCAGACCGTTTTGCCTATTCCGGTGAAAAGCTGTCGCTGAACTTCCAGGATATTGATGTCCGTTCCGTACTGCAGT
TGATCGCTGATTTTACCGACCTGAACTTGGTTGCCAGCGATACCGTGAGTGGCAATATCACTCTTCGTTTGCAGAACGTG
CCTTGGGATCAAGCGCTCGACCTGGTTTTGAAAACCAAGGGGCTGGATAAGCGGCAAGTCGGGAACGTGCTGCTCGTTGC
GCCAGCTGACGAAATCGCTGCGCGTGAACGCCAGGAACTCGAGTCGCAGCGGCAGATTGCCGAGCTTGCACCGTTGCGTC
GCGAGGTCGTGCAAGTCAACTATGCCAAGGCTGCGGACATTGCTCGCTTGTTCCAGTCAGTGACGAGCAACGGCGCCGTT
GCAGAGGATCGTGGCTCTATAGCGGTGGATGATCGCACCAATAACATCATCGCTTATCAAACGCAGGAGCGACTTGACGA
GCTGCGTCGCATCGTCGCTCAGCTCGACATTCCTGTGCGGCAAGTGATGATCGAGGCGCGCATTGTTGAGGCGAATGTGG
GCTACGACAAAGCGCTTGGGGTTCGTTGGGGGGGGAACTACACCAACGACAATTGGGGCTTGTATGGCAAGGACGGTGCC
ATCGGTCGTGATGAAGATGGCGGTCGATATCTTCTTCCAGGTACAGACAAAGTCGGCAATTTTACCCTTGAAGATGCGTT
GGCCCCGGTTCCGTTTGTCGATCTAGGAGTGCTTAACAGCACAGCCGGTATTGGGATTGGCTATGTCTCGGACCATGGAA
TCTTAGACCTTCAATTGTCGGCTATGGAGAAAACCGGTAACGGTGAAGTTGTTTCCCAGCCAAAGGTAGTTACCGCGGAT
AAGGAAACGGCCAAGATCTTGAAAGGCGCGGAAATCCCCTACCAAGAAGCCAGTTCGAGTGGCGCAACGTCGACCTCCTT
CAAGGAGGCAGCTCTTTCGCTTGAGGTGACGCCGCAGATCACGCCGGACAACCGCATTATCATGGAGGTCAAGGTCACCA
AGGATGCCCCTGATTTTGCTAACGCTCTGAATGGCGTGCCGCCGATCAACAAGAACGAAGTCAACGCCAAAGTTCTTGTT
ACCGACGGAGAAACAATCGTCATCGGTGGTGTATTCTCCAACAGCCAGATCAGCAGCATTGAAAAAGTGCCGTTTCTGGG
CGACGTTCCGTTCGTTGGTCGCCTCTTCCGACGGGACATCGTGGAAGATAAAAAATCCGAGCTTCTGGTCTTCTTGACCC
CTAGAATCCTCAACTACCGAGCGGTCGCCGTGGGCCAGTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(375-441)

AMIN domain (AMIN)

(38-123)

Bacterial type II and III secretion system protein (Secretin)

(541-697)

Secretin and TonB N terminus short domain (STN)

(302-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

73.992

100

0.754
  pilQ Acinetobacter baumannii strain A118

39.09

100

0.414
  pilQ Acinetobacter baumannii D1279779

39.09

100

0.414
  comQ Acinetobacter baylyi ADP1

41.667

98.584

0.411
  pilQ Legionella pneumophila strain ERS1305867

37.647

96.317

0.363
  pilQ Legionella pneumophila strain Lp02

37.5

96.317

0.361

Multiple sequence alignment