Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ABA45_RS03650 Genome accession   NZ_CP011494
Coordinates   810225..812342 (+) Length   705 a.a.
NCBI ID   WP_048384368.1    Uniprot ID   A0A0H4HY73
Organism   Marinobacter psychrophilus strain 20041     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 805225..817342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABA45_RS03630 (ABA45_03630) pilM 807412..808476 (+) 1065 WP_048384364.1 pilus assembly protein PilM Machinery gene
  ABA45_RS03635 (ABA45_03635) - 808476..809042 (+) 567 WP_048384365.1 PilN domain-containing protein -
  ABA45_RS03640 (ABA45_03640) - 809039..809650 (+) 612 WP_048384366.1 type 4a pilus biogenesis protein PilO -
  ABA45_RS03645 (ABA45_03645) - 809653..810225 (+) 573 WP_048384367.1 pilus assembly protein PilP -
  ABA45_RS03650 (ABA45_03650) pilQ 810225..812342 (+) 2118 WP_048384368.1 type IV pilus secretin PilQ Machinery gene
  ABA45_RS03655 (ABA45_03655) aroK 812482..813048 (+) 567 WP_014869998.1 shikimate kinase AroK -
  ABA45_RS03660 (ABA45_03660) aroB 813041..814132 (+) 1092 WP_048384369.1 3-dehydroquinate synthase -
  ABA45_RS03665 (ABA45_03665) - 814158..815768 (+) 1611 WP_048384370.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 705 a.a.        Molecular weight: 75466.02 Da        Isoelectric Point: 4.3994

>NTDB_id=146333 ABA45_RS03650 WP_048384368.1 810225..812342(+) (pilQ) [Marinobacter psychrophilus strain 20041]
MNNSNMNAQKCLKPRLAMFKKLNVIVCAVTIGLLSSLANAATLQDVSFSSLPGDRLEVTLQFDGPPPEPTGYTIERPARI
AVDLKDTTSALGARSLPLGSGNAQSMTVVETNDRTRLIFNLIELVPYTTQRNNNALVMIIGGDSADVASGVSGSDGASPV
ASAADAAAALVDVDFRRGAQGEGRVVVRLASATTQVDLSELGGKIRLTMPDLTVPERLRRRLDVTDFATPVQRIDTFIEG
GGAVIEIRPEGDYDYIAYQSGNEFTVSVERLSEEEAVTRREEKFPYSGDKLSLNFQDIEVRSVLQLIADFTGLNLVASDT
VGGSITLRLQNVPWDQALDLILKTKGLDKRQIGNVLLVAPADEIAARERLELETTKQIAELAPVRLDIIQVNYAKAAEVV
ALVQADQELISSRGFISSDDRTNTISVRETIEKLDEIRRLVSTWDVPVRQVSIEARIVRAQTNVAESLGVSWGGAAYSVS
GNNVISVGGSQSAVEEARSAANGGSGEITFPGALAVDLGVSGNGASSFAIGFGSNDFLVDLELSALESDGKAEIVSQPRV
VTADRQTASIKSGQEIPYQEASSSGATSTSFKEAVLSLEVTPQITPDDKIIMDLEVTQDSRGEDTPSGPAINTNSVTTQV
LVANGETIVLGGIFESTNTETTTKTPFLGDIPYLGRLFKRTQTTELRSELLIFITPKIIKNDLVR

Nucleotide


Download         Length: 2118 bp        

>NTDB_id=146333 ABA45_RS03650 WP_048384368.1 810225..812342(+) (pilQ) [Marinobacter psychrophilus strain 20041]
ATGAATAACAGCAACATGAACGCACAAAAATGCTTGAAGCCGAGGCTAGCGATGTTCAAAAAACTCAACGTAATTGTCTG
CGCGGTAACCATTGGGTTGCTGTCCAGCCTTGCTAACGCTGCCACTTTGCAGGATGTGTCGTTTTCTTCTTTACCCGGGG
ATCGGCTGGAAGTGACTTTGCAGTTTGACGGCCCACCGCCTGAACCTACGGGTTACACCATTGAGCGCCCCGCTCGTATT
GCGGTAGACCTGAAAGACACCACCAGTGCCCTTGGTGCCCGCAGCTTGCCGTTGGGCAGCGGGAATGCGCAAAGCATGAC
CGTTGTTGAAACTAACGACCGTACCCGCCTTATTTTCAACCTGATTGAGCTGGTTCCTTACACCACTCAGCGCAATAATA
ACGCGTTGGTGATGATTATTGGCGGCGATTCCGCAGATGTAGCCAGTGGCGTTTCGGGATCTGACGGTGCCAGCCCGGTT
GCTTCGGCAGCGGACGCGGCGGCGGCGTTGGTAGACGTCGATTTTCGTCGCGGTGCACAAGGCGAAGGCCGTGTGGTTGT
GCGGCTGGCCAGTGCGACGACTCAAGTTGACCTGAGCGAACTGGGCGGAAAAATCAGACTGACCATGCCGGACCTAACTG
TGCCCGAGCGTCTGCGTCGCCGTTTAGACGTGACAGATTTTGCCACGCCGGTACAACGGATCGACACCTTTATTGAGGGT
GGCGGTGCGGTTATAGAAATTCGTCCGGAAGGCGACTATGACTACATTGCGTACCAGTCCGGCAACGAATTTACTGTGAG
TGTTGAACGGCTCAGCGAGGAAGAAGCAGTAACCCGCCGTGAAGAGAAGTTCCCATATTCCGGCGACAAGCTTTCGCTAA
ACTTTCAGGACATTGAAGTTCGCTCGGTGCTACAGCTAATCGCTGACTTTACCGGTTTGAATCTGGTGGCCAGCGATACC
GTTGGTGGAAGCATCACGTTGCGCTTGCAGAATGTGCCTTGGGATCAGGCGCTGGATCTCATTTTGAAAACCAAAGGCCT
GGATAAGCGCCAGATTGGCAATGTATTATTGGTAGCGCCCGCCGATGAAATCGCTGCTCGTGAACGGCTGGAACTGGAAA
CAACCAAGCAGATCGCTGAACTTGCCCCAGTGCGTTTGGATATCATTCAGGTCAATTACGCAAAAGCGGCCGAAGTAGTA
GCGTTGGTGCAGGCCGACCAAGAGCTGATTTCAAGCCGCGGTTTCATTTCCTCAGACGACCGAACCAACACCATCAGTGT
TCGTGAAACCATTGAAAAACTGGACGAGATCCGTCGCCTTGTGTCCACCTGGGACGTACCCGTTCGTCAGGTTTCCATTG
AAGCCCGGATTGTGCGCGCGCAAACCAACGTGGCCGAGAGCCTGGGTGTGAGTTGGGGCGGAGCAGCTTACAGCGTGAGT
GGCAACAACGTAATTTCCGTAGGTGGCTCACAATCTGCAGTTGAAGAGGCACGCAGCGCTGCGAACGGCGGATCTGGAGA
GATTACTTTCCCTGGGGCGTTAGCGGTAGATCTGGGCGTTAGCGGCAACGGGGCCTCTTCTTTTGCGATTGGTTTTGGCA
GCAATGACTTCCTGGTAGACCTTGAACTGTCTGCGTTGGAAAGCGATGGCAAAGCGGAAATTGTGTCCCAGCCCAGAGTG
GTTACAGCGGACCGCCAGACAGCGTCGATCAAATCGGGTCAGGAAATTCCGTATCAGGAAGCCAGCAGCAGCGGCGCCAC
CAGCACTTCCTTTAAAGAAGCGGTGTTGTCATTGGAGGTAACGCCGCAGATTACACCGGATGACAAAATCATCATGGACC
TTGAGGTGACTCAGGACTCCCGTGGCGAAGACACCCCCAGCGGCCCGGCCATCAATACCAACTCGGTGACAACTCAGGTA
TTGGTCGCCAACGGTGAAACCATCGTTTTGGGCGGTATTTTCGAATCGACCAACACCGAAACCACCACTAAGACACCGTT
CTTGGGCGATATTCCCTACCTGGGCAGGTTGTTCAAGCGCACTCAGACTACCGAGCTGCGTAGCGAACTGCTGATTTTTA
TCACCCCGAAAATCATCAAAAACGACCTCGTCCGTTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(388-450)

Bacterial type II and III secretion system protein (Secretin)

(545-700)

AMIN domain (AMIN)

(54-137)

Secretin and TonB N terminus short domain (STN)

(314-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H4HY73

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

51.734

98.156

0.508
  pilQ Acinetobacter baumannii strain A118

41.528

100

0.424
  pilQ Acinetobacter baumannii D1279779

41.528

100

0.424
  comQ Acinetobacter baylyi ADP1

42.982

97.021

0.417
  pilQ Legionella pneumophila strain ERS1305867

40.179

95.319

0.383
  pilQ Legionella pneumophila strain Lp02

40.03

95.319

0.382

Multiple sequence alignment