Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   VK72_RS10380 Genome accession   NZ_CP011420
Coordinates   2353459..2354727 (+) Length   422 a.a.
NCBI ID   WP_023988238.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain ATCC 15970     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2348459..2359727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VK72_RS10355 (VK72_10225) - 2349307..2349561 (+) 255 WP_013309950.1 DUF3243 domain-containing protein -
  VK72_RS10360 (VK72_10230) - 2349789..2350562 (+) 774 WP_013370747.1 DUF3388 domain-containing protein -
  VK72_RS10365 (VK72_10235) - 2350593..2351681 (+) 1089 WP_075154080.1 helix-turn-helix domain-containing protein -
  VK72_RS27760 - 2351766..2351930 (+) 165 WP_023988236.1 hypothetical protein -
  VK72_RS10370 (VK72_10240) - 2352074..2352565 (+) 492 WP_023988237.1 YajQ family cyclic di-GMP-binding protein -
  VK72_RS10375 (VK72_10245) pgsA 2352776..2353363 (+) 588 WP_013309954.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  VK72_RS10380 (VK72_10250) cinA 2353459..2354727 (+) 1269 WP_023988238.1 competence/damage-inducible protein A Machinery gene
  VK72_RS10385 (VK72_10255) recA 2354969..2356030 (+) 1062 WP_023988239.1 recombinase RecA Machinery gene
  VK72_RS10390 (VK72_10260) - 2356227..2356976 (+) 750 WP_034095016.1 regulatory protein RecX -
  VK72_RS10395 (VK72_10265) rny 2357350..2358894 (+) 1545 WP_013309958.1 ribonuclease Y -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46368.32 Da        Isoelectric Point: 4.7700

>NTDB_id=145916 VK72_RS10380 WP_023988238.1 2353459..2354727(+) (cinA) [Paenibacillus polymyxa strain ATCC 15970]
MKAEIIAVGTELLLGQIVNTNAQYLSQELATIGIDVYFQTVVGDNIDRLQEAIRIAQKRADIILFSGGLGPTQDDLTKDA
IASVLGRKLHIDRLAMDKLDQFFRNRGVEMTENNRRQALSIEGATPLENETGLAVGDAIAQDGKFYVVLPGPPKELKPMF
ANQAKPWLLQQALSGEEMPIYSKMLKFAGIGESALETHLLDLIQSQTDPTIAPYAKEGEVTIRISTKAASESEALIKLTA
TEVEIQQRLSEYMYASEDVTLEKVIVDLMAKRGLTVSAAESCTGGMLMEHITSIPGSAVMFQGGIVCYSNEMKMKLLNVP
YDYLEGDQAPGAVSKEVALVLAEQARMIMDSDFGLSVTGVAGPGYSERKPVGLVYIGIAERDKETEVHELRLSGNRETIR
LRSVKAILYRLWRRLVENEKPS

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=145916 VK72_RS10380 WP_023988238.1 2353459..2354727(+) (cinA) [Paenibacillus polymyxa strain ATCC 15970]
ATGAAAGCTGAAATAATTGCAGTAGGTACAGAGTTATTGCTCGGACAAATAGTGAATACAAATGCTCAATATTTGTCACA
GGAGTTGGCTACAATCGGAATCGATGTATATTTTCAGACTGTAGTTGGCGATAACATAGATCGGCTTCAGGAAGCGATAA
GAATTGCTCAGAAGCGTGCGGATATTATTTTGTTTTCCGGTGGTCTGGGACCGACTCAGGATGATTTGACGAAAGATGCG
ATAGCGTCTGTATTGGGGCGAAAATTGCACATAGATCGTCTTGCAATGGACAAGCTAGATCAGTTTTTCCGTAACCGTGG
GGTAGAAATGACCGAGAATAACCGCCGGCAGGCGCTTTCTATTGAAGGCGCTACTCCGCTTGAAAATGAGACAGGGCTAG
CTGTGGGCGACGCAATTGCACAGGACGGTAAATTTTATGTAGTTTTGCCTGGACCGCCTAAGGAACTCAAACCCATGTTT
GCAAACCAAGCGAAACCTTGGTTGCTTCAGCAGGCATTGAGCGGTGAGGAAATGCCAATTTATTCAAAAATGCTAAAATT
TGCAGGGATAGGTGAGTCAGCTCTTGAAACCCATTTGTTAGATCTGATCCAATCCCAGACAGACCCCACGATTGCTCCTT
ATGCCAAGGAAGGGGAAGTCACGATCCGTATATCCACCAAGGCGGCCAGCGAAAGTGAAGCACTAATTAAGCTGACGGCT
ACGGAAGTAGAAATTCAGCAGCGTCTTTCGGAATATATGTATGCAAGTGAAGATGTTACGCTGGAGAAGGTTATCGTAGA
TCTAATGGCCAAACGCGGGCTCACTGTGAGTGCGGCAGAAAGCTGTACAGGTGGAATGCTGATGGAACACATCACTTCTA
TACCTGGCAGTGCTGTTATGTTTCAAGGTGGCATCGTGTGCTATTCCAATGAAATGAAGATGAAATTACTCAACGTGCCT
TATGATTATTTGGAAGGGGATCAAGCGCCAGGTGCAGTGAGTAAGGAAGTAGCCCTTGTGCTTGCAGAGCAGGCGAGAAT
GATCATGGACAGCGATTTTGGACTTTCAGTTACTGGTGTTGCCGGGCCTGGGTATTCCGAACGGAAGCCAGTCGGTTTGG
TGTATATTGGCATTGCTGAACGCGACAAGGAAACGGAAGTACATGAACTGAGACTGAGTGGTAACCGTGAAACAATCCGA
CTGCGATCAGTCAAAGCAATCCTGTACAGATTGTGGCGCAGGCTGGTAGAGAACGAGAAACCCTCTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(182-255)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(260-414)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

50.244

97.156

0.488
  cinA Streptococcus mitis NCTC 12261

49.756

97.156

0.483
  cinA Streptococcus pneumoniae TIGR4

49.756

97.156

0.483
  cinA Streptococcus pneumoniae Rx1

49.512

97.156

0.481
  cinA Streptococcus pneumoniae R6

49.512

97.156

0.481
  cinA Streptococcus pneumoniae D39

49.268

97.156

0.479
  cinA Bacillus subtilis subsp. subtilis str. 168

48.762

95.735

0.467
  cinA Streptococcus mutans UA159

47.304

96.682

0.457
  cinA Streptococcus suis isolate S10

45.078

91.469

0.412

Multiple sequence alignment