Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FORC14_RS14920 Genome accession   NZ_CP011406
Coordinates   3191628..3192740 (-) Length   370 a.a.
NCBI ID   WP_025636857.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FORC_014     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3186628..3197740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC14_RS14890 (FORC14_2891) hemF 3187089..3188006 (-) 918 WP_025578082.1 oxygen-dependent coproporphyrinogen oxidase -
  FORC14_RS14895 (FORC14_2892) - 3188054..3188611 (-) 558 WP_005461456.1 L-threonylcarbamoyladenylate synthase -
  FORC14_RS14900 (FORC14_2893) purE 3188811..3189296 (+) 486 WP_063517811.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  FORC14_RS14905 (FORC14_2894) - 3189301..3190434 (+) 1134 WP_063517812.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  FORC14_RS14910 (FORC14_2895) - 3190498..3191067 (-) 570 WP_063517813.1 type I DNA topoisomerase -
  FORC14_RS14915 (FORC14_2896) - 3191146..3191625 (-) 480 WP_005461440.1 DUF494 family protein -
  FORC14_RS14920 (FORC14_2897) dprA 3191628..3192740 (-) 1113 WP_025636857.1 DNA-processing protein DprA Machinery gene
  FORC14_RS14925 (FORC14_2898) - 3192724..3193818 (-) 1095 WP_025636856.1 LysM peptidoglycan-binding domain-containing protein -
  FORC14_RS14930 (FORC14_2899) def 3193957..3194475 (+) 519 WP_005461416.1 peptide deformylase -
  FORC14_RS14935 (FORC14_2900) fmt 3194509..3195456 (+) 948 WP_021453792.1 methionyl-tRNA formyltransferase -
  FORC14_RS14940 (FORC14_2901) rsmB 3195537..3196820 (+) 1284 WP_005394040.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39885.47 Da        Isoelectric Point: 6.4129

>NTDB_id=145655 FORC14_RS14920 WP_025636857.1 3191628..3192740(-) (dprA) [Vibrio parahaemolyticus strain FORC_014]
MKPRNNDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPRNIINSSSDQLYQLGLTNKQLQAWASADKEVDACLTWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHIYPARHRSLAQRVTENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSANQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=145655 FORC14_RS14920 WP_025636857.1 3191628..3192740(-) (dprA) [Vibrio parahaemolyticus strain FORC_014]
ATGAAACCACGCAATAACGACAGTGACCTTGCTGCCTGGCTTAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTCGCAATATCATCAATTCCTCTTCTGATCAGCTCTATCAATTGGGTTTGACGA
ACAAACAGTTGCAAGCTTGGGCTTCGGCCGATAAAGAGGTCGATGCTTGTTTAACGTGGCTAGCCACTTCTACAAATCAT
CACATTCTGACGCTGGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTTGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATTGCCATGGTGGGCAGCCGTAACGCCAGTTTTGATGGTTTACACCATG
CACGTCAATTTGCGGCAGAATTGGCTCAGCAAGAATTGATTGTCACTAGCGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGCGGGTGGTAAGACGATAGCTGTGCTCGGGTCTGGTTTAGAACATATTTATCCTGCTCGTCA
TCGTAGTTTAGCGCAGCGAGTAACAGAGAATGGAGCACTGGTTTCTGAGTTTCGTCCCAATGCCAAGCCTCGAGCAGAAA
ACTTTCCGCGTCGAAACCGTATCATTAGCGGCTTATCGTTAGGTGTGTTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCTAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGCTAATCAAAGTATCGATTTATTTTCTACGTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTCGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(318-363)

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

84.324

100

0.843
  dprA Vibrio cholerae strain A1552

58.649

100

0.586
  dprA Glaesserella parasuis strain SC1401

46.917

100

0.473
  dprA Legionella pneumophila strain ERS1305867

47.853

88.108

0.422
  dprA Haemophilus influenzae Rd KW20

45.858

91.351

0.419
  dprA Neisseria meningitidis strain C311

37.949

100

0.4
  dprA Neisseria meningitidis MC58

37.949

100

0.4
  dprA Neisseria gonorrhoeae MS11

35.825

100

0.376
  dprA Neisseria gonorrhoeae strain FA1090

35.567

100

0.373

Multiple sequence alignment