Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SY83_RS06775 Genome accession   NZ_CP011388
Coordinates   1559528..1560001 (+) Length   157 a.a.
NCBI ID   WP_068605425.1    Uniprot ID   A0A172TGF7
Organism   Paenibacillus swuensis strain DY6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1554528..1565001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SY83_RS06735 (SY83_06755) - 1555685..1556197 (+) 513 WP_068605418.1 DUF4446 family protein -
  SY83_RS06740 (SY83_06760) yyaC 1556172..1556783 (-) 612 WP_068605419.1 spore protease YyaC -
  SY83_RS06745 (SY83_06765) - 1556883..1557134 (+) 252 WP_068605420.1 DUF3343 domain-containing protein -
  SY83_RS06750 (SY83_06770) - 1557146..1558009 (+) 864 WP_068605421.1 mechanosensitive ion channel family protein -
  SY83_RS06755 (SY83_06775) - 1558036..1558242 (+) 207 WP_068605422.1 DUF951 domain-containing protein -
  SY83_RS06765 (SY83_06785) - 1558803..1558988 (-) 186 WP_068605423.1 YjzC family protein -
  SY83_RS06770 (SY83_06790) rpsF 1559196..1559486 (+) 291 WP_068605424.1 30S ribosomal protein S6 -
  SY83_RS06775 (SY83_06795) ssbA 1559528..1560001 (+) 474 WP_068605425.1 single-stranded DNA-binding protein Machinery gene
  SY83_RS06780 (SY83_06800) rpsR 1560055..1560339 (+) 285 WP_068605426.1 30S ribosomal protein S18 -
  SY83_RS06785 (SY83_06805) - 1560544..1563288 (+) 2745 WP_082882366.1 CHASE3 domain-containing protein -
  SY83_RS06790 (SY83_06810) - 1563407..1563829 (+) 423 WP_068610962.1 CBS domain-containing protein -
  SY83_RS06795 (SY83_06815) - 1563999..1564895 (+) 897 WP_068605427.1 DUF2232 domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17469.14 Da        Isoelectric Point: 4.8537

>NTDB_id=145378 SY83_RS06775 WP_068605425.1 1559528..1560001(+) (ssbA) [Paenibacillus swuensis strain DY6]
MLNRVILIGRLTKDPELRYTPAGVAVTQFSLAVDRNFKDQNGEREADFINIVTWRQLAETCANYLRKGRLTAVEGRIQTR
NYDNNEGKRVYVTEVVADNVRFLESNKSEGGNSNSGGFNREEGSGGSYGKGNNSRGNQDPFSDDGKPIDISDDDLPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=145378 SY83_RS06775 WP_068605425.1 1559528..1560001(+) (ssbA) [Paenibacillus swuensis strain DY6]
TTGTTGAATCGTGTTATTCTAATCGGTAGATTAACGAAAGATCCGGAACTGCGTTACACGCCGGCTGGCGTTGCCGTAAC
CCAGTTTTCGCTTGCGGTTGACCGTAACTTTAAAGATCAGAACGGTGAAAGAGAAGCCGATTTTATTAATATTGTTACTT
GGAGACAACTTGCGGAGACTTGCGCGAACTATCTGCGTAAAGGCCGTTTAACCGCGGTTGAAGGCAGAATTCAGACGCGC
AACTACGACAACAACGAAGGTAAACGCGTTTACGTAACTGAAGTCGTAGCTGATAATGTTCGCTTCCTGGAATCGAATAA
GTCAGAAGGCGGCAACAGTAACAGTGGCGGATTTAATCGCGAAGAAGGATCAGGCGGAAGCTACGGAAAAGGAAACAATT
CGCGAGGCAATCAGGATCCGTTCTCCGACGATGGCAAACCGATTGATATATCGGATGATGATCTGCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A172TGF7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.631
  ssb Latilactobacillus sakei subsp. sakei 23K

51.176

100

0.554
  ssb Neisseria meningitidis MC58

37.853

100

0.427
  ssb Neisseria gonorrhoeae MS11

36.723

100

0.414
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.798

69.427

0.401
  ssb Glaesserella parasuis strain SC1401

33.146

100

0.376
  ssbB/cilA Streptococcus pneumoniae TIGR4

48.718

74.522

0.363

Multiple sequence alignment