Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   AAX10_RS06805 Genome accession   NZ_CP011381
Coordinates   1496169..1497497 (-) Length   442 a.a.
NCBI ID   WP_080947094.1    Uniprot ID   -
Organism   Moraxella bovoculi strain 58086     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1491169..1502497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAX10_RS06775 (AAX10_06675) - 1491634..1492128 (+) 495 WP_046698460.1 Dps family protein -
  AAX10_RS06780 (AAX10_06680) gloA 1492177..1492710 (-) 534 WP_406564556.1 lactoylglutathione lyase -
  AAX10_RS06785 (AAX10_06685) - 1492732..1493355 (-) 624 WP_046698462.1 carbonic anhydrase -
  AAX10_RS06790 (AAX10_06690) - 1493367..1494293 (-) 927 WP_080947093.1 hypothetical protein -
  AAX10_RS06795 (AAX10_06695) aroB 1494345..1495460 (-) 1116 WP_046700208.1 3-dehydroquinate synthase -
  AAX10_RS06800 (AAX10_06700) - 1495486..1496079 (-) 594 WP_046700664.1 shikimate kinase -
  AAX10_RS06805 (AAX10_06705) pilQ 1496169..1497497 (-) 1329 WP_080947094.1 type IV pilus secretin PilQ Machinery gene
  AAX10_RS06810 (AAX10_10065) - 1497511..1498137 (-) 627 WP_080947095.1 pilus assembly protein PilP -
  AAX10_RS06815 (AAX10_06715) - 1498130..1498786 (-) 657 WP_046700209.1 type 4a pilus biogenesis protein PilO -
  AAX10_RS06820 (AAX10_06720) - 1498783..1499412 (-) 630 WP_046700210.1 PilN domain-containing protein -
  AAX10_RS06825 (AAX10_06725) pilM 1499405..1500661 (-) 1257 WP_046700211.1 type IV pilus biogenesis protein PilM -
  AAX10_RS06830 (AAX10_06730) - 1500694..1500978 (-) 285 WP_046698467.1 hypothetical protein -

Sequence

Protein


Download         Length: 442 a.a.        Molecular weight: 47912.74 Da        Isoelectric Point: 6.1091

>NTDB_id=145316 AAX10_RS06805 WP_080947094.1 1496169..1497497(-) (pilQ) [Moraxella bovoculi strain 58086]
MKKWPVLMLMLITMVGAAHATSVPAQQYQGERISVEFQDMPVRAVIDILAHAGGANIVASDGVTGNITLRLNNIPWDQAL
DIVVDTKHLIKTLNNGVITISSPDELTQISQRRAQARIQSQQHLPLQTEYIRINYADAKDILSLINHKADASSSAAMLSD
RGVANMDNRTNTLIIKDIQPNIDDILALVSRLDVPVQQVMIEARIVSANDGFSRDLGVSFGVLSNSNRLQIGGSHNALWH
LRSSNNGSTNITRPDHLAVDLGVANPAGRIAFGLINISDVLLDLELSAMQADRRGEVISTPKVLTADKKTARISSGMQIA
YQEETSSGATNTVFKEAALVLEATPTITPDGKITLKLNVKNGTPVTNLGEIAIQEDALETNVIVDDGQTVVLGGIYRQTN
NNGVIKVPFFGDLPVVGKLFRKESRSDTKEELLIFVTPKLVQ

Nucleotide


Download         Length: 1329 bp        

>NTDB_id=145316 AAX10_RS06805 WP_080947094.1 1496169..1497497(-) (pilQ) [Moraxella bovoculi strain 58086]
ATGAAAAAATGGCCTGTATTAATGCTGATGCTAATCACAATGGTGGGCGCTGCTCATGCGACATCTGTACCAGCTCAGCA
ATATCAAGGTGAGCGCATCTCCGTCGAATTTCAAGACATGCCTGTGCGTGCGGTTATCGATATCCTGGCGCATGCAGGCG
GTGCTAATATCGTGGCAAGCGATGGTGTGACAGGAAATATCACCTTAAGATTAAATAACATCCCGTGGGATCAGGCACTT
GACATCGTCGTCGATACCAAGCACCTCATCAAAACCTTGAATAATGGCGTTATTACCATCTCATCGCCAGATGAACTGAC
GCAAATCTCCCAACGCCGCGCCCAAGCACGAATTCAGTCCCAGCAGCATTTGCCACTACAGACCGAATATATCCGCATCA
ATTATGCCGACGCCAAGGATATTTTATCACTGATCAATCATAAGGCTGATGCTTCATCAAGTGCTGCCATGCTGTCAGAT
CGCGGTGTGGCAAACATGGATAATCGTACAAACACACTTATTATTAAAGACATCCAGCCGAATATCGATGACATATTGGC
ATTGGTGTCGCGCCTTGATGTGCCGGTGCAGCAGGTGATGATTGAGGCGAGGATTGTGAGTGCTAATGACGGCTTTAGTC
GTGATCTTGGGGTGAGCTTTGGAGTGTTATCAAACAGCAATCGCTTACAGATTGGCGGGTCTCATAACGCGCTCTGGCAC
CTAAGGTCGTCAAATAATGGATCGACTAACATCACACGCCCTGATCATCTGGCGGTTGATCTGGGTGTGGCGAACCCGGC
GGGCCGCATAGCATTTGGTCTTATCAATATATCAGACGTATTGCTTGATTTGGAATTGTCTGCCATGCAGGCTGATCGTC
GTGGTGAAGTCATCTCAACGCCAAAAGTGTTAACCGCTGATAAGAAAACAGCGCGCATCTCATCAGGCATGCAAATCGCC
TACCAAGAAGAGACATCAAGTGGCGCAACCAACACAGTATTTAAAGAGGCGGCGCTTGTGTTGGAGGCCACGCCAACCAT
CACGCCAGATGGTAAAATTACCCTAAAATTAAACGTCAAAAACGGCACGCCTGTCACCAATCTAGGCGAGATTGCCATCC
AAGAAGATGCTTTGGAGACTAATGTCATCGTCGATGATGGTCAGACTGTCGTGCTGGGTGGTATTTATCGTCAAACCAAT
AATAATGGCGTAATTAAAGTGCCGTTCTTTGGTGATTTGCCCGTGGTCGGAAAATTATTCCGCAAAGAAAGTCGTAGCGA
CACCAAAGAGGAACTTTTGATTTTTGTTACCCCAAAATTGGTGCAATAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(288-442)

Bacterial type II/III secretion system short domain (Secretin_N)

(129-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

48.791

100

0.502
  pilQ Acinetobacter baumannii strain A118

48.791

100

0.502
  comQ Acinetobacter baylyi ADP1

49.438

100

0.498
  pilQ Legionella pneumophila strain ERS1305867

42.523

96.833

0.412
  pilQ Vibrio campbellii strain DS40M4

42.155

96.606

0.407
  pilQ Legionella pneumophila strain Lp02

41.844

95.701

0.4
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

41.549

96.38

0.4
  pilQ Vibrio cholerae strain A1552

41.549

96.38

0.4
  pilQ Pseudomonas aeruginosa PAK

39.498

99.095

0.391

Multiple sequence alignment