Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   AAX08_RS07080 Genome accession   NZ_CP011380
Coordinates   1519576..1520904 (-) Length   442 a.a.
NCBI ID   WP_080947327.1    Uniprot ID   -
Organism   Moraxella bovoculi strain 57922     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1514576..1525904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAX08_RS07050 (AAX08_06980) - 1515041..1515535 (+) 495 WP_046698460.1 Dps family protein -
  AAX08_RS07055 (AAX08_06985) gloA 1515584..1516117 (-) 534 WP_046698461.1 lactoylglutathione lyase -
  AAX08_RS07060 (AAX08_06990) - 1516139..1516762 (-) 624 WP_046698462.1 carbonic anhydrase -
  AAX08_RS07065 (AAX08_06995) - 1516774..1517700 (-) 927 WP_118873470.1 hypothetical protein -
  AAX08_RS07070 (AAX08_07000) aroB 1517752..1518867 (-) 1116 WP_046698463.1 3-dehydroquinate synthase -
  AAX08_RS07075 (AAX08_07005) - 1518893..1519486 (-) 594 WP_052585390.1 shikimate kinase -
  AAX08_RS07080 (AAX08_07010) pilQ 1519576..1520904 (-) 1329 WP_080947327.1 type IV pilus secretin PilQ Machinery gene
  AAX08_RS07085 (AAX08_07015) - 1520918..1521544 (-) 627 WP_118873472.1 pilus assembly protein PilP -
  AAX08_RS07090 (AAX08_07020) - 1521537..1522193 (-) 657 WP_046698464.1 type 4a pilus biogenesis protein PilO -
  AAX08_RS07095 (AAX08_07025) - 1522190..1522819 (-) 630 WP_046698465.1 PilN domain-containing protein -
  AAX08_RS07100 (AAX08_07030) pilM 1522812..1524068 (-) 1257 WP_162888294.1 type IV pilus biogenesis protein PilM -
  AAX08_RS07105 (AAX08_07035) - 1524101..1524385 (-) 285 WP_046698467.1 hypothetical protein -

Sequence

Protein


Download         Length: 442 a.a.        Molecular weight: 47870.66 Da        Isoelectric Point: 6.1091

>NTDB_id=145303 AAX08_RS07080 WP_080947327.1 1519576..1520904(-) (pilQ) [Moraxella bovoculi strain 57922]
MKKWPVLMLMLITMVGAAHATSAPAQQYQGERISVEFQDMPVRAVIDVLAHAGGANIVASDGVTGNITLRLNNIPWDQAL
DIVVDTKHLIKTLNNGVITISSPDELTQISQRRAQARIQSQQHLPLQTEYIRINYADAKDILSLINHKADASSSAAMLSD
RGVANMDNRTNTLIIKDIQPNIDDILALVSRLDVPVQQVMIEARIVSANDGFSRDLGVSFGVLSNSNRLQIGGSHNALWH
LRSSNNGSTNITRPDHLAVDLGVANPAGRIAFGLINISDVLLDLELSAMQADRRGEVISTPKVLTADKKTARISSGMQIA
YQEETSSGATNTVFKEAALVLEATPTITPDGKITLKLNVKNGTPVTNLGEIAIQEDALETNVIVDDGQTVVLGGIYRQTN
NNGVIKVPFFGDLPVVGKLFRKESRSDTKEELLIFVTPKLVQ

Nucleotide


Download         Length: 1329 bp        

>NTDB_id=145303 AAX08_RS07080 WP_080947327.1 1519576..1520904(-) (pilQ) [Moraxella bovoculi strain 57922]
ATGAAAAAATGGCCTGTATTAATGCTGATGTTAATCACAATGGTGGGCGCTGCTCATGCGACATCTGCACCAGCTCAGCA
ATATCAAGGTGAGCGCATCTCCGTCGAATTTCAAGACATGCCTGTGCGTGCGGTTATCGATGTCCTGGCGCATGCAGGCG
GTGCTAATATCGTGGCAAGCGATGGTGTGACAGGAAATATCACCTTAAGATTAAATAACATCCCCTGGGATCAGGCACTT
GACATCGTCGTCGATACCAAGCACCTCATCAAAACCTTGAATAATGGCGTTATTACCATCTCATCGCCAGATGAACTGAC
GCAAATCTCCCAACGCCGCGCCCAAGCACGAATTCAGTCCCAGCAGCATTTGCCACTACAGACCGAATATATCCGCATCA
ATTATGCCGACGCCAAGGATATTTTATCACTGATCAATCATAAGGCTGATGCTTCATCAAGTGCTGCCATGCTGTCAGAT
CGCGGTGTGGCAAACATGGATAATCGTACAAACACACTTATTATTAAAGACATCCAGCCGAATATCGATGACATATTGGC
ATTGGTGTCGCGCCTTGATGTGCCGGTGCAGCAGGTGATGATTGAGGCGAGGATTGTGAGTGCTAATGATGGCTTTAGTC
GTGATCTTGGGGTGAGCTTTGGAGTGTTATCAAACAGCAATCGCTTACAGATTGGCGGGTCTCATAATGCGCTCTGGCAC
CTAAGGTCGTCAAATAATGGATCGACTAACATCACACGCCCTGACCATCTGGCGGTTGATCTGGGTGTGGCGAACCCGGC
GGGCCGCATAGCATTTGGTCTTATCAATATATCAGACGTATTGCTTGATTTGGAATTGTCTGCCATGCAGGCTGATCGTC
GTGGTGAAGTCATCTCAACGCCAAAAGTGTTAACCGCTGATAAGAAAACAGCGCGCATCTCATCAGGCATGCAAATCGCC
TACCAAGAAGAGACATCAAGTGGCGCAACCAACACAGTATTTAAAGAGGCGGCGCTTGTGTTGGAGGCCACGCCAACCAT
CACACCAGATGGTAAAATTACCCTAAAATTAAACGTCAAAAACGGCACGCCTGTCACCAATCTAGGCGAGATTGCCATCC
AAGAAGATGCTTTGGAGACTAATGTCATCGTCGATGATGGCCAGACTGTCGTGCTGGGTGGTATTTATCGTCAAACCAAT
AATAATGGCGTGATTAAAGTGCCGTTCTTTGGTGATTTGCCCGTGGTCGGAAAATTATTCCGCAAAGAAAGTCGTAGCGA
CACCAAAGAGGAACTTTTGATTTTTGTCACCCCAAAATTGGTGCAATAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(288-442)

Bacterial type II/III secretion system short domain (Secretin_N)

(129-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii strain A118

48.791

100

0.502
  pilQ Acinetobacter baumannii D1279779

48.791

100

0.502
  comQ Acinetobacter baylyi ADP1

49.438

100

0.498
  pilQ Legionella pneumophila strain ERS1305867

42.523

96.833

0.412
  pilQ Vibrio campbellii strain DS40M4

42.155

96.606

0.407
  pilQ Legionella pneumophila strain Lp02

41.844

95.701

0.4
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

41.549

96.38

0.4
  pilQ Vibrio cholerae strain A1552

41.549

96.38

0.4
  pilQ Pseudomonas aeruginosa PAK

39.498

99.095

0.391

Multiple sequence alignment